View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_23 (Length: 334)
Name: NF9959_low_23
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 40494869 - 40495112
Alignment:
| Q |
18 |
aaattaaaatacctttgattgtaaatcaatttttattcttctggaatttaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaac |
117 |
Q |
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| T |
40494869 |
aaattaaaatacctttgattgtaaatcaatttttattcttctggaatttaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaac |
40494968 |
T |
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| Q |
118 |
tggatttgtgatgaaaaatagaacgcagtaatgacctatactatcatgatcatggaaagaaaacacaaaaagggcatctaaaagagaaatctaaaattat |
217 |
Q |
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| T |
40494969 |
tggatttgtgatgaaaaatagaacgcagtaatgacctatactatcatgatcatggaaagaaaacacaaaaagggcatctaaaagagaaatctaaaattat |
40495068 |
T |
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| Q |
218 |
ttataaaattgattcaatctcatgagaatatatttaaatcgatg |
261 |
Q |
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| T |
40495069 |
ttataaaattgattcaatctcatgagaatatatttaaatcgatg |
40495112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 48117604 - 48117487
Alignment:
| Q |
18 |
aaattaaaatacctttgattgtaaatcaatttttattcttctggaatttaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaac |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48117604 |
aaattaaaatatctttgattgtaaatcaatttttattcttctggaattcaatcgcaaaaagacctttgattgttcaactgggttgatgaattcaatcaac |
48117505 |
T |
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| Q |
118 |
tggatttgtgatgaaaaa |
135 |
Q |
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| T |
48117504 |
tggatttgtgataaaaaa |
48117487 |
T |
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