View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_26 (Length: 328)
Name: NF9959_low_26
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 37806786 - 37807090
Alignment:
| Q |
16 |
ccaacttctcccccatctctaaaataaatagggacttcaaccccaaaaaattccctcaaatgtgtcctaagattcatagcatcacattcattcataatcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806786 |
ccaacttctcccccatctctaaaataaatagggacttcaaccccaaaaaattcccttaaatgtgtcctaagattcatagcatcacattcattcataatcc |
37806885 |
T |
|
| Q |
116 |
ccaaagaaggaggcaaaccaaccataaccatacttgcactcatatgatgtggtgtcccaagatgtgtcccccaagcttccaccaacatctcacccatctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806886 |
ccaaagaaggaggcaaaccaaccataaccatacttgcactcatatgatgtggtgtcccaagatgtgtcccccaagcttccaccaacatctcacccatctc |
37806985 |
T |
|
| Q |
216 |
aacaacacaatcatggttcctctctttgatcccttcaattccaccttcaaacctattcacaaattccataaccgttggaaccactaattgagcgctataa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37806986 |
aacaacacaatcatggttcctctctttgatcccttcaattccaccttcaaacctattcacaaattccataaccgttggaaccactaattgagcgctataa |
37807085 |
T |
|
| Q |
316 |
tctct |
320 |
Q |
| |
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||||| |
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| T |
37807086 |
tctct |
37807090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 38516547 - 38516489
Alignment:
| Q |
228 |
atggttcctctctttgatcccttcaattccaccttcaaacctattcacaaattccataa |
286 |
Q |
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||||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
38516547 |
atggttcctcttcataatcccttcaattccaccttcaaaccgattcacaaactccataa |
38516489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 317
Target Start/End: Complemental strand, 45784533 - 45784249
Alignment:
| Q |
33 |
tctaaaataaatagggacttcaaccccaaaaaattccctcaaatgtgtcctaagattcatagcatcacattcattcataatccccaaagaaggaggcaaa |
132 |
Q |
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|||| |||| ||||| |||||||| ||||||| ||||||||||||||||| || | | |||||| | ||| | ||| ||| ||| ||| ||||||| |
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| T |
45784533 |
tctataatatataggaacttcaactccaaaaacatccctcaaatgtgtcctcagcgtaagtgcatcagaatcacttctaaccccaaaacaagtaggcaaa |
45784434 |
T |
|
| Q |
133 |
ccaaccataaccatacttgcactcatatgatgtggtgtcccaagatgtgtcccccaagcttccaccaacatctcacccatctcaacaacacaatcatggt |
232 |
Q |
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||||||||||||||||| |||| |||||| | || | |||||||| || |||||||||| |||||||||||| |||||||||| |||| ||||| | |
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| T |
45784433 |
ccaaccataaccatactagcacacatatgtttcggacttccaagatgagttccccaagctttcaccaacatctctcccatctcaataacagcttcatgat |
45784334 |
T |
|
| Q |
233 |
tcctctctttgatcccttcaattccaccttcaaacctattcacaaattccataaccgttggaaccactaattgagcgctataatc |
317 |
Q |
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|||||| || ||||||||||| ||||||||||||||||| |||||||||| | | |||||||| |||||||| |||||||| |
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| T |
45784333 |
tcctcttcttaatcccttcaatcccaccttcaaacctattgacaaattccaaagcttcaggaaccaccaattgagcactataatc |
45784249 |
T |
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