View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_27 (Length: 323)
Name: NF9959_low_27
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 93 - 287
Target Start/End: Complemental strand, 11819775 - 11819581
Alignment:
| Q |
93 |
aaggggaaaattatattaatttattaaagtgacattattgatcattttataattatcctctccaagagctttaaattatatatattctttgaagttataa |
192 |
Q |
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| T |
11819775 |
aaggggaaaattatattaatttattaaagtgacattactgatcattttataattatcctctccaagagctttagattatatatattctttgaagttataa |
11819676 |
T |
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| Q |
193 |
agttaagctcttatcattaagttggcatcttgtgaacttcatttgatatgcgattaaatttcactagtttgcgacacctctagaatcatgtgtag |
287 |
Q |
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| T |
11819675 |
agttaagctcttatcattaagttggcatctcgtgaacttcatttgatatgcgattaaatttcactagtttgcgacacctctagaatcatgtgtag |
11819581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 11819999 - 11819896
Alignment:
| Q |
11 |
gtttggtgtttattgtcctttaaaaaataaatgtaatgattgatccatctaatttgatatgccattttttacaataaaaaagaaggggaaaattatatta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11819999 |
gtttggtgtttattgtcctttaaaaaataaatgtaatgattgatccatctcatttgatatgccattttttacaataaaaaagaaggggaaaattatattt |
11819900 |
T |
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| Q |
111 |
attt |
114 |
Q |
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|||| |
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| T |
11819899 |
attt |
11819896 |
T |
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