View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_28 (Length: 320)
Name: NF9959_low_28
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 38900431 - 38900148
Alignment:
| Q |
18 |
cacagagccaacttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38900431 |
cacagagccaacttacagttctcaaattgcacccaataccctttaccaaacaagctaaccaataacttagcctgtgaaatattacatgtactcattccaa |
38900332 |
T |
|
| Q |
118 |
cacgtttataccctttcaatgaatnnnnnnntctttcttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctatt |
217 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38900331 |
cacgtttataccctttcaatgaataaaaaaatcttccttcccacaatattctctcctctttttcacaaggaaactgtcttacactgtctaagattctatt |
38900232 |
T |
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| Q |
218 |
ccccaaaacctctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaat |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38900231 |
ccccaaaacctctttctctataagggctaactccatcttatggctacgcgacagagtactaacaagtgaatctgaaactgcaat |
38900148 |
T |
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