View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_29 (Length: 319)
Name: NF9959_low_29
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 2354568 - 2354872
Alignment:
| Q |
17 |
agttttttcttacaaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcatccttcaaatgaatccc--------------ggtga |
102 |
Q |
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| T |
2354568 |
agttttttcgtactaacttgatgtgatcggaacttttaggagcctaaagaagaaatacgtttcatctttcaaatgaatccctaactatattagtcggtga |
2354667 |
T |
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| Q |
103 |
gggatggactatgtcacgactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttaatattttttctctcatt |
202 |
Q |
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| T |
2354668 |
gg-atggactatgtcacaactcacgatatttcaaaaacaaaattcgacatcaacattgcatgtatatgtgatctacgattttcatattttttctctcatt |
2354766 |
T |
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| Q |
203 |
cagcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatatggttttcgattttaatcatgtt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2354767 |
cagcaatttttacaccacacattctaattatattttatacaatgtcaaatatgatatttgacttatgtacttatatattgttttcgattttaatcatgtt |
2354866 |
T |
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| Q |
303 |
ctctct |
308 |
Q |
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|||||| |
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| T |
2354867 |
ctctct |
2354872 |
T |
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