View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_3 (Length: 589)
Name: NF9959_low_3
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 14 - 589
Target Start/End: Complemental strand, 50467218 - 50466644
Alignment:
| Q |
14 |
ggacatcaaaacagtgcaagtgggaaattaaatatccatatagattcacgaggatctatagtaaaaccagacttgtgaaaacaagggcctaaaattaaat |
113 |
Q |
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| T |
50467218 |
ggacaacaaaacagtgcaagtgggaaattaaatatccatatagattcacgaggatctatagtaaaaccagacttgtgaaaacaagggcctaaaattaaat |
50467119 |
T |
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| Q |
114 |
gacagttattcaatataaaattcacgtggagttttctccttaagtagaaggcatccattggatgtaatcactaccaaagtacttattgattcatcaacat |
213 |
Q |
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| T |
50467118 |
gacagttattcaatataaaattcacgtggagttttctccttaagtagaaggcatccattggatgtaatcactaccaaagtacttattgattcatcaacat |
50467019 |
T |
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| Q |
214 |
tagtgtaatatagttatcattccttttatgtatcatgaggttacaattattctttgtcatgtttactattaaaagcttaatggctttaatttgataagaa |
313 |
Q |
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| T |
50467018 |
tagtgtaatatagttatcattccttttatgtatcatgaggttacaattattctttgtcatgtttactattaaaagcttaatggctttaatttgataagaa |
50466919 |
T |
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| Q |
314 |
ataatgttggggacctctactcaaacctcattttcaagtttgctaagtgttacttttatctacaactaagccattattttaggacccatgatcacatgga |
413 |
Q |
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| T |
50466918 |
ataatgttggggacctctactcaaacctcattttcaagtttgctaagtgttacttttatctacaactaagccattattttaggacccatgatcacatgga |
50466819 |
T |
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| Q |
414 |
tcagtgtacaagcatttgtttagtcacagaaaaaacaggtgcattattatttctaagttttctctataggataaggtgtgaagctttggataagagatcc |
513 |
Q |
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| T |
50466818 |
tcagtgtacaagcatttgtttagtcacagaaaaaacaggtgcattattatttctaagttttctctataggataaggtgtgaagctttggataagagatcc |
50466719 |
T |
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| Q |
514 |
caacttccctagctaatagtaactaataagcttgatatggagtcaactttaatggtttatagataccatcggattg |
589 |
Q |
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| T |
50466718 |
caac-tccctagctaatagtaactaataagcttgatatggagtcaactttaatggtttatagataccatcggattg |
50466644 |
T |
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