View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_30 (Length: 310)
Name: NF9959_low_30
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_30 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 210401 - 210094
Alignment:
| Q |
3 |
ctagtggagaagcagagaccgagtgtcctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaatta |
102 |
Q |
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| T |
210401 |
ctagtggagaaacaaacaccgagtgtcctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaatta |
210302 |
T |
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| Q |
103 |
tgcttataaaagggcagaggatgctgccaatgcattcaacccgaaaaaccctcattttcgttcaaaaatcaccaagggaagacatgcggtgagaatttct |
202 |
Q |
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| T |
210301 |
tgcttataaaagggcagaggatgctgccaatgcattcaacccgaaaaaccctcattttcgttcaaaaatcaccaagggaagacatgcggtgagaatttct |
210202 |
T |
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| Q |
203 |
ctttatagtttttggtttaaagtaagcgttgagttatttttgttgtcattgaaattgatctttccttcattgtgcagtatgttccttctatatttgcttc |
302 |
Q |
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| T |
210201 |
ctttatagtttttggtttaaagtaagcgttgagttatttttgttgtcattgaaattgatctttccttcattgtgcagtatgttccttctatatttgcttc |
210102 |
T |
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| Q |
303 |
agaatatc |
310 |
Q |
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|||||||| |
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| T |
210101 |
agaatatc |
210094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 197099 - 196883
Alignment:
| Q |
30 |
ctaggcctatgaaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaattatgcttataaaagggcagaggatgctgc |
129 |
Q |
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| T |
197099 |
ctagtcctacgaaaaggtccaaggttgaaacaagtgagtgtcatgggaaaaaggccaaaagcgtgtctaaacatgcttctacaagagcagaggttgctgc |
197000 |
T |
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| Q |
130 |
caatgcattcaacccgaaaaaccctcattttcgttcaaaaatcaccaagggaagacatgcggtgagaatttctctttatagtttttggtttaaagtaagc |
229 |
Q |
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| T |
196999 |
caatgaattcaaaccaaaaaacccttatttttgttcaataatcgccaagcagaattatacggtgaggattttactttatagcttttggtttaaagtatat |
196900 |
T |
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| Q |
230 |
gttgagttatttttgtt |
246 |
Q |
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| T |
196899 |
gttgagttatttatgtt |
196883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 205166 - 205224
Alignment:
| Q |
102 |
atgcttataaaagggcagaggatgctgccaatgcattcaacccgaaaaaccctcatttt |
160 |
Q |
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| T |
205166 |
atgcttttaaaagtgcagaggttgctgccaatgaattcaatccaaaaaacccttatttt |
205224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 221928 - 221886
Alignment:
| Q |
24 |
agtgtcctaggcctatgaaaaggtccaaggttgaaacaagtga |
66 |
Q |
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| T |
221928 |
agtgtcatagtcctaggaaaaggtccaaggttgaaacaagtga |
221886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 300
Target Start/End: Original strand, 205221 - 205310
Alignment:
| Q |
211 |
tttttggtttaaagtaagcgttgagttatttttgttgtcattgaaattgatctttccttcattgtgcagtatgttccttctatatttgct |
300 |
Q |
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| T |
205221 |
tttttggcttaaagtaaatgttgagttatttatgttgtcacttaaattgatcactcatctattgtgcagaatgttactgctaaatttgct |
205310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 41 - 196
Target Start/End: Complemental strand, 29838241 - 29838086
Alignment:
| Q |
41 |
aaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaattatgcttataaaagggcagaggatgctgccaatgcattca |
140 |
Q |
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| T |
29838241 |
aaaaggtccaaggttgaaacatgtgagaggcttcggaaaaaggtcaaaaacatgtctaaatatgcttctaaaagagtagaggatgccgccaaagaactca |
29838142 |
T |
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| Q |
141 |
acccgaaaaaccctcattttcgttcaaaaatcaccaagggaagacatgcggtgaga |
196 |
Q |
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| T |
29838141 |
acccaaacaacccttattttcgttccaaaatcgttaagggaaaatatgcggtgaga |
29838086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 300
Target Start/End: Complemental strand, 6903388 - 6903129
Alignment:
| Q |
41 |
aaaaggtccaaggttgaaacaagtgagagtccagggaaaaaggtcaaaagcatgtctaattatgcttataaaagggcagaggatgctgccaatgcattca |
140 |
Q |
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| T |
6903388 |
aaaagttccagggttgaaacaagtggcagtcaagtgataaagctcaaaatcaggtttggacatgcttttaaaaatgcagaggttgctgccaatgaattca |
6903289 |
T |
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| Q |
141 |
acccgaaaaaccctcattttcgttcaaaaatcaccaagggaagacatgcggtgagaatttctctttatagtttttggtttaaagtaagcgttgagttatt |
240 |
Q |
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| T |
6903288 |
atccaaaaaacccttatttttgttcaaaaattgctaagcgaaatcttgtggtgagaattttaccttgtagtttttggcttaaagtaaatgttgagttatt |
6903189 |
T |
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| Q |
241 |
tttgttgtcattgaaattgatctttccttcattgtgcagtatgttccttctatatttgct |
300 |
Q |
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| T |
6903188 |
tatgttgtcacttaaattgatcactcatctattgtgcagaatgttactgctaaatttgct |
6903129 |
T |
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