View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_33 (Length: 298)
Name: NF9959_low_33
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 73 - 285
Target Start/End: Complemental strand, 33120464 - 33120252
Alignment:
| Q |
73 |
aaagctatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaac |
172 |
Q |
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| T |
33120464 |
aaagctatattaattgtaacaaaaatataaattataacactaatgtgtgatatatatgttttttcagatacggcaaagtacatccaagagcttaagaaac |
33120365 |
T |
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| Q |
173 |
tgttacaaactccaactgaaataacagtggtgctttcgtttctgatttttcccaagggtgttcctcagttgctttatgatggtgctaccaagactacggt |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33120364 |
tgttacaaactccaactgaaataacagtggtgctttcgtttctgatttttcccaaggatgttcctcagttgctttatgatggtgctaccaagactacggt |
33120265 |
T |
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| Q |
273 |
tcgtatattttct |
285 |
Q |
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| T |
33120264 |
tcgtatattttct |
33120252 |
T |
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