View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_35 (Length: 289)
Name: NF9959_low_35
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 50263596 - 50263856
Alignment:
| Q |
19 |
ctttaaacacttcacattcaacccttgtacctgttcttcccaaagcatcacaaaactccatgttcctatccttcaatatatccatctcagatatacacac |
118 |
Q |
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| T |
50263596 |
ctttaaaaacttcacattcaacccttgtacctgttcttcccaaagcatcacaaaactccatgttcctatccttcaatatatccatctcagatatacacac |
50263695 |
T |
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| Q |
119 |
caacataggcatcatcagtagcttcaattcctccattttcaccaatggattacaccatggatgatcgcgatcttcgccatatggtaatgccaatcgccaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50263696 |
caacataggcatcatcagtagcttcaattcctccattttcaccaatggattacaccatggatgatcgcgatcttcgccatatggtaatgccaatcgccaa |
50263795 |
T |
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| Q |
219 |
taagtatctgaagctgctaaattcaaagcagaaccagataattgttccatgcatttctctg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50263796 |
taagtatctgaagctgctaaattcaaagcagaaccagataattgttccatgcatttctctg |
50263856 |
T |
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