View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_40 (Length: 250)
Name: NF9959_low_40
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_40 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 2215320 - 2215082
Alignment:
| Q |
12 |
agcaaaggagacattaatttctgctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaact |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215320 |
agcaaaagagacattaatttctgctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaact |
2215221 |
T |
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| Q |
112 |
attcaaacaatacattagtttccattgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttcca |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215220 |
attcaaacaatgcattagtttccattgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttcca |
2215121 |
T |
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| Q |
212 |
cacattccgctattacttagactaactgctggtggacca |
250 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
2215120 |
cacattccgctattacttagactaactgccggtggacca |
2215082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 2202723 - 2202502
Alignment:
| Q |
12 |
agcaaaggagacattaatttctgctagccatacttgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaact |
111 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
2202723 |
agcaaaagagacattaatttctgcaagccatacttgtaatgaggtttagaaaaataacttttaatgcatatgtatctataaaaattgacccaagtcaact |
2202624 |
T |
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| Q |
112 |
attcaaacaatacattagtttccattgacctgatatcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttcca |
211 |
Q |
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| T |
2202623 |
aaccaatcaatgcataagtttccattgacctgatatcatccttatttttcttacttgaattgc-------ataacaagtatgttaacttatttctttcca |
2202531 |
T |
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| Q |
212 |
cacattccgctattacttagactaactgc |
240 |
Q |
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|||||||| ||| ||||||| |||||||| |
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| T |
2202530 |
cacattccactagtacttaggctaactgc |
2202502 |
T |
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