View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_42 (Length: 244)
Name: NF9959_low_42
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 40200048 - 40200108
Alignment:
| Q |
167 |
aaaacagttaacggagtaaacatatgagccatatgggtgcaacttcaaagtaggaatttct |
227 |
Q |
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| T |
40200048 |
aaaacagttaacggagtaaacatatgagccatatcggtgcaacttcaaagtaggaatttct |
40200108 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 40199921 - 40199966
Alignment:
| Q |
41 |
cacccacaaattgaataactaacaacaatccaaagaaataagtatg |
86 |
Q |
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| T |
40199921 |
cacccacaaattgaataactaacaacaatccaaagaaataagtatg |
40199966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40199822 - 40199861
Alignment:
| Q |
1 |
aaagagaaagttacgtgttccattttctaatttacatgcc |
40 |
Q |
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| T |
40199822 |
aaagagaaagttatgtgttccattttctaatttacatgcc |
40199861 |
T |
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