View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_45 (Length: 240)
Name: NF9959_low_45
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 24058510 - 24058377
Alignment:
| Q |
1 |
tataactcaacaatcacttctccaaagcatagttaataggaaaaattcagtacatttcagaattgataacatatgctttcaacaaaacatgaaacagaaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058510 |
tataactcaacaatcacatctccaaagcatagttaataggaaaaattcagtacatttcagaattgataacatatgctttcaacaaaacatgaaacagaaa |
24058411 |
T |
|
| Q |
101 |
atcattcaacaacaatagaagaggaggaggagga |
134 |
Q |
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| T |
24058410 |
atcattcaacaacaatagaagaggaggaggagga |
24058377 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 7560057 - 7559979
Alignment:
| Q |
145 |
cagtggcggatcttctttgtgacatgcagttgccatggtaccccctaaggttactatatatatgatttcagccgtaata |
223 |
Q |
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||||||||||||||| ||| ||| ||||| |||||||||| |||| |||||| ||||||||||||| | |||||||||| |
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| T |
7560057 |
cagtggcggatcttccttgggacctgcaggtgccatggtatcccccaaggtttctatatatatgatattagccgtaata |
7559979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 32275385 - 32275307
Alignment:
| Q |
146 |
agtggcggatcttctttgtgacatgcagttgccatggtaccccctaaggttactatatatatgatttcagccgtaatat |
224 |
Q |
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| T |
32275385 |
agtggcggatcttcgttgtgacctgcagatgctatggtatcccccaaggttactatatatatgatatcaactgtaatat |
32275307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 32275290 - 32275246
Alignment:
| Q |
180 |
tggtaccccctaaggttactatatatatgatttcagccgtaatat |
224 |
Q |
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| T |
32275290 |
tggtatcccccaaggttactatatatatgatatcagccgtaatat |
32275246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 984887 - 984945
Alignment:
| Q |
149 |
ggcggatcttctttgtgacatgcagttgccatggtaccccctaaggttactatatatat |
207 |
Q |
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||||||||||| ||| |||| |||| ||||||||||||||| ||| || |||||||||| |
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| T |
984887 |
ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatat |
984945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 26414736 - 26414678
Alignment:
| Q |
149 |
ggcggatcttctttgtgacatgcagttgccatggtaccccctaaggttactatatatat |
207 |
Q |
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||||||||||| ||| |||| |||| ||||||||||||||| ||| || |||||||||| |
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|
| T |
26414736 |
ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatat |
26414678 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 49138289 - 49138226
Alignment:
| Q |
144 |
gcagtggcggatcttctttgtgacatgcagttgccatggtaccccctaaggttactatatatat |
207 |
Q |
| |
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|||| ||||||||||| ||| |||| |||| ||||||||||||||| ||| || |||||||||| |
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| T |
49138289 |
gcaggggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatat |
49138226 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 32240741 - 32240799
Alignment:
| Q |
149 |
ggcggatcttctttgtgacatgcagttgccatggtaccccctaaggttactatatatat |
207 |
Q |
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||||||||||| ||| |||| |||| ||||||||||||||| ||| || |||||||||| |
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| T |
32240741 |
ggcggatcttccttgggacaggcaggtgccatggtaccccccaagttttctatatatat |
32240799 |
T |
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