View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9959_low_46 (Length: 239)

Name: NF9959_low_46
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9959_low_46
NF9959_low_46
[»] chr5 (3 HSPs)
chr5 (1-224)||(2327717-2327942)
chr5 (13-106)||(1374462-1374555)
chr5 (16-69)||(32766087-32766139)
[»] chr7 (3 HSPs)
chr7 (10-180)||(48825851-48826015)
chr7 (12-106)||(21529589-21529682)
chr7 (10-117)||(37179976-37180083)
[»] chr2 (2 HSPs)
chr2 (10-210)||(7154927-7155126)
chr2 (14-117)||(35819013-35819115)
[»] chr1 (5 HSPs)
chr1 (10-106)||(32226394-32226489)
chr1 (25-106)||(36536312-36536394)
chr1 (10-102)||(25892693-25892785)
chr1 (25-105)||(37491199-37491280)
chr1 (13-57)||(31460687-31460731)
[»] chr3 (3 HSPs)
chr3 (10-117)||(3987288-3987395)
chr3 (12-106)||(41653771-41653865)
chr3 (12-105)||(41653917-41654010)
[»] chr4 (3 HSPs)
chr4 (25-106)||(54856769-54856851)
chr4 (10-117)||(36556981-36557088)
chr4 (25-106)||(49600109-49600191)
[»] chr8 (2 HSPs)
chr8 (10-106)||(14358502-14358598)
chr8 (12-106)||(22576306-22576400)
[»] chr6 (1 HSPs)
chr6 (14-56)||(2252379-2252420)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2327717 - 2327942
Alignment:
Q  1 gttttaaaaccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaaagggacaagttaaaaaatttcaactaaaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327717 gttttaaaaccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaaagggacaagttaaaaaatttcaactaaaatc 2327816  T
Q  101 aaatagttgctgaagcgacaggtatctgtcccgccccgctatgccgctatagcagctgaaggcggc--cgctaactgattccacaccactaccacgaatt 198  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  2327817 aaatagctgctgaagcgacagctatctgtcccgccccgctatgccgctatagcagctgaaggcggccgcgctaactgattccacaccactaccacgaatt 2327916  T
Q  199 gcggagcggttcgcaaccgctatact 224  Q
    ||||||||||||||||||||||||||    
T  2327917 gcggagcggttcgcaaccgctatact 2327942  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 1374555 - 1374462
Alignment:
Q  13 caaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    ||||||||||||||| | |||||||| |||||||||||| ||||| ||| || |||| || | ||| || |||| ||||||||||||||||||||    
T  1374555 caaaatgccctaaaa-taaatttagacatttggaaaccaaacaaaatgtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatag 1374462  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 32766139 - 32766087
Alignment:
Q  16 aatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa 69  Q
    |||||||||||| | ||||||||||||||||||||||||||| ||| |||||||    
T  32766139 aatgccctaaaa-taaatttagaaatttggaaaccatacaaaatgttttaaaaa 32766087  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 48826015 - 48825851
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatagtt 108  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||| ||| || |||| ||||||||||||||||||||      
T  48826015 ccccaaaataccctaaaa-tcaatttagaaatttggaaaccatacaaaatgttttaaaaatagggtcaatttgaaaattttcaactaaaatcaaatagcg 48825917  T
Q  109 gctgaagcgacaggtatctgtcccgccccgctatgccgctatagcagctgaaggcggccgctaactgattcc 180  Q
    ||||||||| | | |||     |||| |||||| |||||||||||||||||| |||||||||| || |||||    
T  48825916 gctgaagcggctgctat-----ccgctccgctacgccgctatagcagctgaa-gcggccgctatctcattcc 48825851  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 21529682 - 21529589
Alignment:
Q  12 ccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaaagggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    ||||||| |||||||| ||||||||||||||||||||||||  ||| | | |||||| |||| ||| || |||||||||||||||||||||||||    
T  21529682 ccaaaatcccctaaaa-tcaatttagaaatttggaaaccattaaaaatattttaaaatagggtcaatttgaaaaatttcaactaaaatcaaatag 21529589  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 37180083 - 37179976
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatagtt 108  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||  ||| || |||| || | ||| || |||| ||||||||||||||||||||      
T  37180083 ccccaaaatgccctaaaa-taaatttagaaatttggaaatcatacaacatgtttttaaaatagtgtcaatttgaaaattttcaactaaaatcaaatagca 37179985  T
Q  109 gctgaagcg 117  Q
    |||||||||    
T  37179984 gctgaagcg 37179976  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 7154927 - 7155126
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatagtt 108  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||| ||| ||||||| || | |||  | |||| ||||||||||||||||||||      
T  7154927 ccccaaaatgccctaaaa-tcaatttagaaatttgaaaaccatacaaaatgttttaaaaatagtgtcaatatgaaaattttcaactaaaatcaaatagcg 7155025  T
Q  109 gctgaagcgacaggtatctgtcccgccccgctatgccgctatagcagctgaaggcggccgctaactgattccacaccactaccacgaattgcggagcggt 208  Q
    || |||||| | | ||||||  |||| || |||||| | |||||| ||| || ||| |||||| || ||||| |||| |||| |||| | ||| ||||||    
T  7155026 gccgaagcggccgctatctgctccgctccactatgctgttatagccgct-aaagcgaccgctatctcattccgcaccgctacaacgattagcgtagcggt 7155124  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 117
Target Start/End: Complemental strand, 35819115 - 35819013
Alignment:
Q  14 aaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaaagggacaagttaaaaaatttcaactaaaatcaaatagttgctga 113  Q
    |||||||||||||| |||||||||||| ||||||||||||||||  || |||||| |||   || ||  ||| || |||||||||||||||||  |||||    
T  35819115 aaaatgccctaaaa-tcaatttagaaaattggaaaccatacaaaaggttttaaaataggcttaatttggaaatttccaactaaaatcaaatagcggctga 35819017  T
Q  114 agcg 117  Q
    ||||    
T  35819016 agcg 35819013  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 32226394 - 32226489
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| ||| | ||||| |||| ||| ||  ||| ||||||||||||||||||||    
T  32226394 ccccaaaatgccctaaa--tcaatttagaaatttggaaaccatacaaaatgtttcaaaaatagggtcaatttggaaattttcaactaaaatcaaatag 32226489  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 36536394 - 36536312
Alignment:
Q  25 aaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| || | ||| || |||||||| ||||||||| ||||||    
T  36536394 aaaatcaatttagaaatttggaaaccatacaaaatgttttaaaaatagtgtcaatttgaaaaattttaactaaaattaaatag 36536312  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 25892785 - 25892693
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaa 102  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| || | ||| || || | ||||||||||||||||    
T  25892785 ccccacaatgccctaaaa-tcaatttagaaatttggaaaccatacaaaatgttttaaaaatagtgtcaaattgaatattttcaactaaaatcaa 25892693  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 105
Target Start/End: Original strand, 37491199 - 37491280
Alignment:
Q  25 aaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaata 105  Q
    |||||||||||||||||||||||||||| |||| ||| | ||||| |||| ||| || ||||  ||||||||||||||||||    
T  37491199 aaaatcaatttagaaatttggaaaccatgcaaaatgtttgaaaaatagggtcaatttgaaaatattcaactaaaatcaaata 37491280  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 31460731 - 31460687
Alignment:
Q  13 caaaatgccctaaaaatcaatttagaaatttggaaaccatacaaa 57  Q
    |||||||||||||||||||||||  |||||| |||||||||||||    
T  31460731 caaaatgccctaaaaatcaatttcaaaattttgaaaccatacaaa 31460687  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 3987395 - 3987288
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtg-tattaaaaaagggacaagttaaaaaatttcaactaaaatcaaatagtt 108  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||| || | |||||| | || ||| ||  ||| ||||||||||||||||||||      
T  3987395 ccccaaaatgccctaaaa-tcaatttagaaatttggaaaccatgcaaaatgtttttaaaatatggtcaatttggaaattttcaactaaaatcaaatagcg 3987297  T
Q  109 gctgaagcg 117  Q
    |||||||||    
T  3987296 gctgaagcg 3987288  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 41653865 - 41653771
Alignment:
Q  12 ccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||| ||| ||||||| |  | ||| || |||| ||||||||||||||||||||    
T  41653865 ccaaaatgccctaaaa-tcaatttagaaattgagaaaccatacaaaatgttttaaaaataatgccaatttgaaaattttcaactaaaatcaaatag 41653771  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 41654010 - 41653917
Alignment:
Q  12 ccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaata 105  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||| ||| ||||||| |  | ||| || |||| |||||||||||||||||||    
T  41654010 ccaaaatgccctaaaa-tcaatttagaaattgagaaaccatacaaaatgttttaaaaataatgtcaatttgaaaattttcaactaaaatcaaata 41653917  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 54856851 - 54856769
Alignment:
Q  25 aaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||| || | ||| || |||| ||||||||||||||||||||    
T  54856851 aaaatcaatttagaaatttggaaaccatgcaaaatgttttaaaaatagtgtcaatttgaaaattttcaactaaaatcaaatag 54856769  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 36556981 - 36557088
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtg-tattaaaaaagggacaagttaaaaaatttcaactaaaatcaaatagtt 108  Q
    |||||||||||||||||| |||||||||||||||||||||||  |||| || | |||||| | || ||| ||  ||| |||||| |||||||||||||      
T  36556981 ccccaaaatgccctaaaa-tcaatttagaaatttggaaaccaagcaaaatgtttttaaaatatggtcaatttggaaattttcaattaaaatcaaatagca 36557079  T
Q  109 gctgaagcg 117  Q
    |||||||||    
T  36557080 gctgaagcg 36557088  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 49600191 - 49600109
Alignment:
Q  25 aaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    ||||| |||||||||||| |||||||||||||| ||| ||||||| || | ||| || |||| |||| |||||||||||||||    
T  49600191 aaaataaatttagaaattcggaaaccatacaaaatgttttaaaaatagtgtcaatttgaaaattttcgactaaaatcaaatag 49600109  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 14358598 - 14358502
Alignment:
Q  10 ccccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    ||||||||||||| |||| |||||||||||||||||||||||| |||| ||| ||||||| || |  || || |||| ||||||||||||||||||||    
T  14358598 ccccaaaatgcccgaaaa-tcaatttagaaatttggaaaccatgcaaaatgttttaaaaatagtgtaaatttgaaaattttcaactaaaatcaaatag 14358502  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 22576306 - 22576400
Alignment:
Q  12 ccaaaatgccctaaaaatcaatttagaaatttggaaaccatacaaagtgtattaaaaa-agggacaagttaaaaaatttcaactaaaatcaaatag 106  Q
    |||||||||||||||| | |||||| |||||  |||| |||||||| ||| ||||||| || ||||| || |||| ||||||||||||||||||||    
T  22576306 ccaaaatgccctaaaatt-aatttataaattgagaaatcatacaaaatgttttaaaaatagtgacaatttgaaaattttcaactaaaatcaaatag 22576400  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 2252379 - 2252420
Alignment:
Q  14 aaaatgccctaaaaatcaatttagaaatttggaaaccatacaa 56  Q
    |||||||||||||| |||||||||||||||||| |||||||||    
T  2252379 aaaatgccctaaaa-tcaatttagaaatttggacaccatacaa 2252420  T

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