View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9959_low_48 (Length: 235)
Name: NF9959_low_48
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9959_low_48 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 12230 - 12467
Alignment:
| Q |
1 |
tttttatttattgtttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgccttt |
100 |
Q |
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| T |
12230 |
tttttatttattggttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgccttt |
12329 |
T |
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| Q |
101 |
aatgcttaaacacattagaaatttaattgaagttacataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataa |
197 |
Q |
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| T |
12330 |
aatgcttaaacacattagaaatttaattgaagttacataacttttgtcagaagcaatccaaaatccttagtatgaaccttacatttaacttgccaaataa |
12429 |
T |
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| Q |
198 |
catattatataatgtgcatttgatcatatatatgtctg |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
12430 |
catattatataatgtgcatttgatcatatatatgtctg |
12467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19967 - 20204
Alignment:
| Q |
1 |
tttttatttattgtttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgccttt |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19967 |
tttttatttattggttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgccttt |
20066 |
T |
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| Q |
101 |
aatgcttaaacacattagaaatttaattgaagttacataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataa |
197 |
Q |
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| T |
20067 |
aatgcttaaacacattagaaatttaattgaagttacataacttttgtcagaagcaatccaaaatccttagtatgaaccttacatttaacttgccaaataa |
20166 |
T |
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| Q |
198 |
catattatataatgtgcatttgatcatatatatgtctg |
235 |
Q |
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| T |
20167 |
catattatataatgtgcatttgatcatatatatgtctg |
20204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 29098 - 29326
Alignment:
| Q |
7 |
tttattgtttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcgcctttaatgct |
106 |
Q |
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| T |
29098 |
tttattgtttcaatttataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagcacctccaaagct |
29197 |
T |
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| Q |
107 |
taaacacattagaaatttaattgaagttacataacttttgtcacaagcaatccaaaatccttagtatgaac---acatttaacttgccaaataacatatt |
203 |
Q |
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| T |
29198 |
taaacacattagaaatttaattgaagttacataacttttgtcacaattaatccaaaatccttagtatgaaccttacatttaacttgccaaataacatatt |
29297 |
T |
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| Q |
204 |
atataatgtgcatttgatcatatatatgt |
232 |
Q |
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| T |
29298 |
atataatgtgcatttgatcatatatatgt |
29326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 36575422 - 36575509
Alignment:
| Q |
7 |
tttattgtttcaattcataacagggattgtcgcaaataatggcacaggagaagtttctgttgatcaatatcatcgctacaaagtaagc |
94 |
Q |
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||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| | ||||||||| |
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| T |
36575422 |
tttattgtttcaattggtaacaggtattgtcacaaataatggcacaggagaagtttatgttgatcaatatcatcgcaataaagtaagc |
36575509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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