View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9959_low_8 (Length: 435)

Name: NF9959_low_8
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9959_low_8
NF9959_low_8
[»] chr5 (2 HSPs)
chr5 (338-376)||(38685296-38685334)
chr5 (338-371)||(10948766-10948799)
[»] chr4 (1 HSPs)
chr4 (343-383)||(18814805-18814845)
[»] chr6 (1 HSPs)
chr6 (344-381)||(24105283-24105320)
[»] chr3 (1 HSPs)
chr3 (340-377)||(2304055-2304092)


Alignment Details
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 38685334 - 38685296
Alignment:
Q  338 tggaagtaattgaatataaccacatgtgtcagtgtcatg 376  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  38685334 tggaagtaattgaatgtaaccacatgtgtcagtgtcatg 38685296  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 371
Target Start/End: Complemental strand, 10948799 - 10948766
Alignment:
Q  338 tggaagtaattgaatataaccacatgtgtcagtg 371  Q
    ||||||||||||||||||||||||||||| ||||    
T  10948799 tggaagtaattgaatataaccacatgtgttagtg 10948766  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 383
Target Start/End: Complemental strand, 18814845 - 18814805
Alignment:
Q  343 gtaattgaatataaccacatgtgtcagtgtcatgttggtgt 383  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  18814845 gtaattgaatataaccacatgtgttagtgtcgtgttggtgt 18814805  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 24105320 - 24105283
Alignment:
Q  344 taattgaatataaccacatgtgtcagtgtcatgttggt 381  Q
    ||||||||||||| || |||||||||||||||||||||    
T  24105320 taattgaatataatcaaatgtgtcagtgtcatgttggt 24105283  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Complemental strand, 2304092 - 2304055
Alignment:
Q  340 gaagtaattgaatataaccacatgtgtcagtgtcatgt 377  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  2304092 gaagtaattgaacataaccacatgtgtcagtatcatgt 2304055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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