View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9959_low_9 (Length: 430)

Name: NF9959_low_9
Description: NF9959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9959_low_9
NF9959_low_9
[»] chr3 (4 HSPs)
chr3 (12-412)||(1605364-1605764)
chr3 (360-409)||(1622832-1622881)
chr3 (76-130)||(29233208-29233262)
chr3 (153-211)||(39304625-39304683)
[»] chr7 (9 HSPs)
chr7 (35-310)||(18780147-18780420)
chr7 (310-412)||(18780477-18780579)
chr7 (151-211)||(22189530-22189590)
chr7 (156-208)||(26703333-26703385)
chr7 (151-210)||(21556661-21556720)
chr7 (67-129)||(18777370-18777432)
chr7 (144-205)||(18779140-18779201)
chr7 (215-255)||(18775984-18776024)
chr7 (73-125)||(18777458-18777509)
[»] chr5 (4 HSPs)
chr5 (58-128)||(34980521-34980591)
chr5 (68-144)||(34980409-34980485)
chr5 (148-211)||(34980218-34980281)
chr5 (178-211)||(24426327-24426360)
[»] chr8 (2 HSPs)
chr8 (58-211)||(10150178-10150329)
chr8 (67-131)||(33831878-33831942)
[»] chr1 (2 HSPs)
chr1 (146-211)||(17645771-17645836)
chr1 (72-127)||(39252694-39252748)
[»] chr2 (4 HSPs)
chr2 (74-124)||(28781195-28781245)
chr2 (58-127)||(16605174-16605243)
chr2 (72-126)||(5867689-5867743)
chr2 (148-205)||(14437538-14437595)
[»] chr4 (2 HSPs)
chr4 (146-211)||(38347234-38347299)
chr4 (154-211)||(47509093-47509150)
[»] chr6 (2 HSPs)
chr6 (70-111)||(6859510-6859551)
chr6 (70-122)||(3439045-3439097)


Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 1605364 - 1605764
Alignment:
Q  12 agcagagagatagaacctatatattaagaaaaaacctcgtggcatgcaagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtctt 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1605364 agcaaagagatagaacctatatattaagaaaaaacctcgtggcatgcaagattttctaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtctt 1605463  T
Q  112 gtacttcaagaaacaaccttaactgtcttgcacactacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605464 gcacttcaagaaacaaccttaattgtcttgcacactacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 1605563  T
Q  212 accatgttaagattttgaggatttggagaaattgaatgaaaagagctttaaaagattgaatgagaataatagacgaagagaatcattttgataaaaggta 311  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  1605564 accatgttaaaattttgaggatttggagaaattgaatgaaaagagctttaaaaggttgaatgagaataatacacgaagagaatcattttgataaaaggta 1605663  T
Q  312 acttcctaataataaactctaactagttttgtatttcacacttaccaaataattgaactaattacttacactactaactatcattattcttaatagcttc 411  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1605664 acttcctaataataaactctaactaattttgtatttcacacttaccaaataattgaactaattacttacactactaactatcattattcttaatagcttc 1605763  T
Q  412 c 412  Q
    |    
T  1605764 c 1605764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 409
Target Start/End: Original strand, 1622832 - 1622881
Alignment:
Q  360 ataattgaactaattacttacactactaactatcattattcttaatagct 409  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  1622832 ataattgaactaattacttacaccgctaactatcattattcttaatagct 1622881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 29233208 - 29233262
Alignment:
Q  76 aaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacct 130  Q
    |||||||  |||||| |||||||||||| |||||||| |||||||||||||||||    
T  29233208 aaagtaaataagtgatggaaccaccttggttgtcttgcacttcaagaaacaacct 29233262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 39304625 - 39304683
Alignment:
Q  153 ttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    ||||||||||||||||| ||  ||  ||||||||||| ||||||||||||||| |||||    
T  39304625 ttcctttacaattctaaacaatgttagacttcttcaatatgtatattttcaactaacac 39304683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 3e-86; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 35 - 310
Target Start/End: Original strand, 18780147 - 18780420
Alignment:
Q  35 ttaagaaaaaacctcgtggcatgcaagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaac 134  Q
    |||||||||||||| ||||||||||||| || |||||||||||| ||||||||||| ||||||||| ||||||| ||| ||||||||||| |||||||      
T  18780147 ttaagaaaaaaccttgtggcatgcaagacttgccaagcaagaaactaaccaagtgatggaaccaccatgcttgtgttgaacttcaagaaataaccttact 18780246  T
Q  135 tgtcttgcacactacctcttcctttacaattctaagcatcgtgggacttctt-caacatgtatattttcaaccaacacaccatgttaagattttgaggat 233  Q
    ||||||||||  |||||||||||||||||||||||||||  |||||||| || |||||||||||||||||||||| |||| |||||||||||||||||||    
T  18780247 tgtcttgcac--tacctcttcctttacaattctaagcattttgggacttttttcaacatgtatattttcaaccaagacac-atgttaagattttgaggat 18780343  T
Q  234 ttggagaaattgaatgaaaagagctttaaaagattgaatgagaataatagacgaagagaatcattttgataaaaggt 310  Q
    ||||||||||||||| | |||||| ||||||| ||||||||||||||||  || |||||||||||||||||||||||    
T  18780344 ttggagaaattgaataacaagagcattaaaaggttgaatgagaataatactcgtagagaatcattttgataaaaggt 18780420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 18780477 - 18780579
Alignment:
Q  310 taacttcctaataataaactctaactagttttgtatttcacacttaccaaataattgaactaattacttacactactaactatcattattcttaatagct 409  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18780477 taacttcctaataataaactctaactaattttgtatttcacacttacccaataattgaactaattacttacactactaactatcatttttcttaatagct 18780576  T
Q  410 tcc 412  Q
    |||    
T  18780577 tcc 18780579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 22189530 - 22189590
Alignment:
Q  151 tcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    |||||||||||||| |||||||  ||| ||||||||||| |||||||||||||||||||||    
T  22189530 tcttcctttacaatactaagcaatgtgtgacttcttcaatatgtatattttcaaccaacac 22189590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 26703333 - 26703385
Alignment:
Q  156 ctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaa 208  Q
    |||||||||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  26703333 ctttacaattataagcaatgtgagacttcttcaacatgtatattttcaaccaa 26703385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 21556720 - 21556661
Alignment:
Q  151 tcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaaca 210  Q
    ||||||||||||||||||||||  ||| ||||| ||||||||||| ||| ||||||||||    
T  21556720 tcttcctttacaattctaagcaatgtgagactttttcaacatgtacattatcaaccaaca 21556661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 18777370 - 18777432
Alignment:
Q  67 ccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacc 129  Q
    |||| |||||||||||  || |||||||||||  |||||||||||| ||||||||||||||||    
T  18777370 ccaaacaagaaagtaaagaattgaaggaaccatattgcttgtcttgaacttcaagaaacaacc 18777432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 18779140 - 18779201
Alignment:
Q  144 cactacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaac 205  Q
    ||||||||||| ||||| |||||||||||  |||  ||| ||||||||||||||||||||||    
T  18779140 cactacctcttactttataattctaagcaatgtgacactccttcaacatgtatattttcaac 18779201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 18775984 - 18776024
Alignment:
Q  215 atgttaagattttgaggatttggagaaattgaatgaaaaga 255  Q
    |||||||||||||||||||||||||| ||| ||||||||||    
T  18775984 atgttaagattttgaggatttggagatattaaatgaaaaga 18776024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 18777458 - 18777509
Alignment:
Q  73 aagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaac 125  Q
    |||||||||| ||||||||||||||||| | ||||||| | ||||||||||||    
T  18777458 aagaaagtaaacaagtgaaggaaccaccat-cttgtctcgcacttcaagaaac 18777509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 34980591 - 34980521
Alignment:
Q  58 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaac 128  Q
    ||||| || |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||    
T  34980591 caagacttgccaagcaagaaagtaaacaagtgaaggaatcaccttgcttgtcttggacttcaagaaacaac 34980521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 34980409 - 34980485
Alignment:
Q  68 caagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtcttgcac 144  Q
    |||| |||||||||| ||| |||||||| ||||||||||| |||| ||||||||||||||||||   ||||||||||    
T  34980409 caagtaagaaagtaaacaactgaaggaatcaccttgcttgccttgcacttcaagaaacaaccttgcttgtcttgcac 34980485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 34980281 - 34980218
Alignment:
Q  148 acctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    ||||||||||||| |||||||||||  ||  |||||||| ||||||||||||||||||||||||    
T  34980281 acctcttcctttataattctaagcaatgtaagacttctttaacatgtatattttcaaccaacac 34980218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 24426360 - 24426327
Alignment:
Q  178 ggacttcttcaacatgtatattttcaaccaacac 211  Q
    |||||||||||||||||| |||||||||||||||    
T  24426360 ggacttcttcaacatgtacattttcaaccaacac 24426327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 211
Target Start/End: Complemental strand, 10150329 - 10150178
Alignment:
Q  58 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaaccttaactgtcttgcacactacctcttcct 157  Q
    ||||| || |||| ||| ||||||| ||| |||| |||||   |||||||||||| ||||||||| ||||| ||   |||||||||   ||||| ||||     
T  10150329 caagacttgccaaacaaaaaagtaaacaaatgaatgaaccgttttgcttgtcttgcacttcaagatacaacattgcttgtcttgcat--taccttttcca 10150232  T
Q  158 ttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    |||||||| |||| |  ||| |||||||||||||||||||||||||||||||||    
T  10150231 ttacaattttaagtaatgtgagacttcttcaacatgtatattttcaaccaacac 10150178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 33831942 - 33831878
Alignment:
Q  67 ccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaacctt 131  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||| ||| ||||||||||| ||||||    
T  33831942 ccaatcaagaaagtaaacaagtgaagcaacaaccttgcttgtgttgcacttcaagaaataacctt 33831878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 17645771 - 17645836
Alignment:
Q  146 ctacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    ||||| |||||||||||||||||||||  ||| ||||||||||||||| |||| ||||||||||||    
T  17645771 ctaccccttcctttacaattctaagcaatgtgagacttcttcaacatgcatatattcaaccaacac 17645836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 39252694 - 39252748
Alignment:
Q  72 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaa 127  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  39252694 caagaaagtaaacaagtgaaggaaccacc-tgcttgtcttgaacttcaataaacaa 39252748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 28781195 - 28781245
Alignment:
Q  74 agaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaa 124  Q
    ||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  28781195 agaaagtaaacaagtgaaggaaccaccttgattgtcttgcacttcaagaaa 28781245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 16605243 - 16605174
Alignment:
Q  58 caagattttccaagcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaacaa 127  Q
    ||||| ||||||||||||||| |||  ||||||||||||| ||||| ||| |||| |||| |||||||||    
T  16605243 caagactttccaagcaagaaattaaaaaagtgaaggaacctccttgtttgccttgcactttaagaaacaa 16605174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 5867743 - 5867689
Alignment:
Q  72 caagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaagaaaca 126  Q
    ||||||||| | || ||||||||||| ||||  ||||||||||||||||||||||    
T  5867743 caagaaagtgatcaggtgaaggaacctccttatttgtcttgtacttcaagaaaca 5867689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 14437538 - 14437595
Alignment:
Q  148 acctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaac 205  Q
    |||||||||||||||||| ||||||  ||| |||||||| ||||||||  ||||||||    
T  14437538 acctcttcctttacaattttaagcaatgtgagacttcttaaacatgtacgttttcaac 14437595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 38347299 - 38347234
Alignment:
Q  146 ctacctcttcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    ||||||||| ||||||||||||||||  ||||| ||||||||||| | |||||||||||| |||||    
T  38347299 ctacctctttctttacaattctaagcgacgtggaacttcttcaacttatatattttcaactaacac 38347234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 47509093 - 47509150
Alignment:
Q  154 tcctttacaattctaagcatcgtgggacttcttcaacatgtatattttcaaccaacac 211  Q
    |||||||||||| |||| |  |||  |||| |||||||||||||||||||||||||||    
T  47509093 tcctttacaattttaagtaatgtgcaactttttcaacatgtatattttcaaccaacac 47509150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 6859510 - 6859551
Alignment:
Q  70 agcaagaaagtaaccaagtgaaggaaccaccttgcttgtctt 111  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  6859510 agcaagaaagtaaccaagtgaagcaactaccttgcttgtctt 6859551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 3439097 - 3439045
Alignment:
Q  70 agcaagaaagtaaccaagtgaaggaaccaccttgcttgtcttgtacttcaaga 122  Q
    ||||||||| ||| ||||||||| ||||||||||||| ||||| |||||||||    
T  3439097 agcaagaaaataaacaagtgaagcaaccaccttgcttatcttgcacttcaaga 3439045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University