View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_1D_high_1 (Length: 893)
Name: NF9960_1D_high_1
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_high_1 |
 | |
|
| [»] scaffold0015 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 328 - 872
Target Start/End: Complemental strand, 1402084 - 1401543
Alignment:
| Q |
328 |
gagaactaccaacggattcgtagttttaggataaatatgtccagcaccccctgacgctagtaaagtcgccttcgaaagaaatcttaccacctnnnnnnnn |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402084 |
gagaactaccaacggattcgtagttttaggataaatatgtccagcaccccctgacgctagtaaagtcgccttcgaaagaaatcttaccacctaaaaaagc |
1401985 |
T |
|
| Q |
428 |
nnnnnnngattaaagattagaaaatatattcaatgatggccgtaatttaggtctcaaacaatcacacataattgcttttcccacctctagagtttcagta |
527 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1401984 |
taaaaaagattaaagattagaaaatatattcaatgatggccgtaatttaggtctcaaacaatcacacataattgcttttcccacctctagagtttcagta |
1401885 |
T |
|
| Q |
528 |
ttaagtgtgtcaacaccaagacaggttatatcagatccatcctgcaacaccagcaacatgtttcatcagttagcaaatgcatcaaaactttcaaaatgtt |
627 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1401884 |
ttaagtgtgtcaacaccaagacaggttatatcagatccatcctgcaacaccagcaacatgtttca---gttagcaaatgcatcaaaactttcaaaatgtt |
1401788 |
T |
|
| Q |
628 |
cgtcaaatttttctgagatgtcaaaacaattttatgccatcaacattatgtgctaagaaaatcttaggaatactaaaaggaaagaaaaagagaacatacc |
727 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1401787 |
cgtcaaatttttctgagatgtcaaaacaattttatgccatcaacattatgtgctaagaaaatcttaggaatactaaaaggaaagaaaaagagaacatacc |
1401688 |
T |
|
| Q |
728 |
tgacaagtgagaagatctatagcaaaatggtgttcaaacacaaaaatattaggattgttgataactgccttcaatagagcgcgctcaatctcttttcctg |
827 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1401687 |
tgacaagtgagaagatctatagcaaaatggtgttcaaacacaaaaatatgaggattgttgataactgccttcaaaagagcgcgctcaatctcttttcctg |
1401588 |
T |
|
| Q |
828 |
tcatatcagcagcatgaacgattctgttatgtgaatgacctccct |
872 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1401587 |
tcatatcagcagcatgaacgattctgttatgtgaatgacctccct |
1401543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 1402394 - 1402148
Alignment:
| Q |
18 |
acatcaattgaatttagttttgtatctaagcgagatacgactagcatgtatagtaagataccgacaaccatgctatcaagtatcgacactacaaagggaa |
117 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1402394 |
acatcgattgaatttagttttgtatctaagcgagatacgactagcatgtatagtaagataccgacaaccatgctaccaagtatcgacactacaaagggaa |
1402295 |
T |
|
| Q |
118 |
aactagaccacttgatgactattcaataattccagaatgcaatcaaactgcattataaatcatctagannnnnnnnnnnnnnnnnnngagaggaaaatca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1402294 |
aactagaccacttgatgactattcaataattccagaatgcaatcaaactgcattataaatcatctagattttttattttttatttttgagaggaaaatca |
1402195 |
T |
|
| Q |
218 |
tgctagattattctatttttcatcatgattcgtgttattaaatacct |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402194 |
tgctagattattctatttttcatcatgattcgtgttattaaatacct |
1402148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 7256332 - 7256402
Alignment:
| Q |
35 |
ttttgtatctaagcgagatacgactagcatgtatagtaagataccgacaaccatgctatcaagtatcgaca |
105 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7256332 |
ttttttatctaatcgagatacgactagcatatatagtaagatactgacaaccatgctatcaagtatcgaca |
7256402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 24762297 - 24762228
Alignment:
| Q |
20 |
atcaattgaatttagttttgtatctaagcgagatacgactagcatgtatagtaagataccgacaaccatg |
89 |
Q |
| |
|
||||||||||||||| || |||||| ||||||| |||| |||||||| ||||||||| || ||||||| |
|
|
| T |
24762297 |
atcaattgaatttagcattccatctaatcgagatatgacttgcatgtatcgtaagatactgataaccatg |
24762228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 71127 - 71181
Alignment:
| Q |
24 |
attgaatttagttttgtatctaagcgagatacgactagcatgtatagtaagatac |
78 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| |||||||| ||||||||| |
|
|
| T |
71127 |
attgaatttagttttgtatcaaattgagagacgacttgcatgtattgtaagatac |
71181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 10931794 - 10931851
Alignment:
| Q |
20 |
atcaattgaatttagttttgtatctaagcgagatacgactagcatgtatagtaagata |
77 |
Q |
| |
|
||||||| |||||||||||| ||| || |||||||| |||||||| ||| |||||||| |
|
|
| T |
10931794 |
atcaattaaatttagttttgcatcgaatcgagatacaactagcatttatcgtaagata |
10931851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University