View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_high_10 (Length: 407)

Name: NF9960_1D_high_10
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_high_10
NF9960_1D_high_10
[»] chr4 (4 HSPs)
chr4 (1-385)||(37136824-37137208)
chr4 (83-136)||(40829665-40829718)
chr4 (83-135)||(37562169-37562221)
chr4 (346-387)||(37141176-37141217)
[»] chr6 (2 HSPs)
chr6 (73-136)||(10890389-10890453)
chr6 (83-139)||(29246410-29246466)
[»] chr3 (2 HSPs)
chr3 (83-140)||(32424381-32424438)
chr3 (90-139)||(34837425-34837474)
[»] chr1 (1 HSPs)
chr1 (83-135)||(32581074-32581126)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 37137208 - 37136824
Alignment:
Q  1 caaattatgttcaaatgcacatgatttgcaagttttcaaatacacacttaaaaattatggttattgatgctcaaaatcgtgataattgtgttcagtggat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37137208 caaattatgttcaaatgcacatgatttgcaagttttcaaatatacacttaaaaattgtggttattgatgctcaaaatcgtgataattgtgttcagtggat 37137109  T
Q  101 ggctaatgaattgcgacaccttgctatattcattaaccacttaatgaactgttacattgcagtagcatctaaacaattgtccgattccatctgtgtttaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37137108 ggctaatgaattgcgacaccttgctatattcattaaccacttaatgaactgttacattgcagtagcatctaaacaattgtccgattccatctgtctttaa 37137009  T
Q  201 aaatttagcttccttgatactcatgtttttgcttttgaatattcgatcttcattggaggtggatggtatatattccttctaaattggtttaattgcattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37137008 aaatttagcttccttgatactcatgtttttgcttttgaatattcgatcttcattggaggtggatggtatatattccttctaaattggtttaattgcattg 37136909  T
Q  301 gtgcttgcttgcttgcatcaatcacatattttctgatggctcaccatgtgagtactgtgttgcaggaagtcaatcgtctgcttac 385  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  37136908 gtgcttgcttgcttgcatcaatcacatattttctgatggttcgccatgtgagaactgtgttgcaggaagtcaatcgtctgcttac 37136824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 40829665 - 40829718
Alignment:
Q  83 taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcattaa 136  Q
    |||||||| ||||||||||| |||||| |||| |||||||| ||||||||||||    
T  40829665 taattgtgctcagtggatggttaatgagttgctacaccttgttatattcattaa 40829718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 37562221 - 37562169
Alignment:
Q  83 taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcatta 135  Q
    ||||||| ||||| |||||  |||||||||||||||||||| |||||||||||    
T  37562221 taattgtattcagaggatgattaatgaattgcgacaccttgttatattcatta 37562169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 387
Target Start/End: Complemental strand, 37141217 - 37141176
Alignment:
Q  346 atgtgagtactgtgttgcaggaagtcaatcgtctgcttactg 387  Q
    |||||||||| |||||||||||||| |||||| |||||||||    
T  37141217 atgtgagtaccgtgttgcaggaagtaaatcgtttgcttactg 37141176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 10890389 - 10890453
Alignment:
Q  73 aaaatcgtg-ataattgtgttcagtggatggctaatgaattgcgacaccttgctatattcattaa 136  Q
    ||||||||| ||||||||||||||||||||| |||||| | | ||||||||| ||||||||||||    
T  10890389 aaaatcgtggataattgtgttcagtggatggttaatgagtcgtgacaccttgttatattcattaa 10890453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 29246410 - 29246466
Alignment:
Q  83 taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcattaacca 139  Q
    ||||| ||||||||| |||| |||||| ||||||||||||| |||||||||||||||    
T  29246410 taattatgttcagtgtatggttaatgagttgcgacaccttgttatattcattaacca 29246466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 32424438 - 32424381
Alignment:
Q  83 taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcattaaccac 140  Q
    |||||||||| ||||||||| ||||||||||  |||| ||| ||||||||||||||||    
T  32424438 taattgtgttaagtggatggataatgaattggaacacattgttatattcattaaccac 32424381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 34837425 - 34837474
Alignment:
Q  90 gttcagtggatggctaatgaattgcgacaccttgctatattcattaacca 139  Q
    ||||| || ||||| |||||||||  ||||||||||||||||||||||||    
T  34837425 gttcattgcatggccaatgaattgttacaccttgctatattcattaacca 34837474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 32581126 - 32581074
Alignment:
Q  83 taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcatta 135  Q
    |||||||||| ||||||| | |||||| |||||||| |||| |||||||||||    
T  32581126 taattgtgtttagtggattgttaatgagttgcgacagcttgttatattcatta 32581074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University