View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_high_12 (Length: 356)
Name: NF9960_1D_high_12
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 27929801 - 27929467
Alignment:
| Q |
21 |
aaagccttcatgtgaaccatggttttccaccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccaca |
120 |
Q |
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| T |
27929801 |
aaagccttcatgtgaaccatggttttccaccagttcaaatattaacttatggatacgtgttcgcttgagataagcatccgcaggtggaaaccaatccaca |
27929702 |
T |
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| Q |
121 |
ttgagctagaaaaattcaacatatgtcaggttaaatccatataagcaaccatatgaatcactagggagttactaccaattgaaataatataacttaaaag |
220 |
Q |
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| T |
27929701 |
ttgagctagaaaaattcaacatatgtcatgttaaatccatataagcaactatatgaatcactagggagttactaccaattgaaataatataacttaaaaa |
27929602 |
T |
|
| Q |
221 |
atatatatggtgaggaataaaataattggaaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaat |
320 |
Q |
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| T |
27929601 |
atatatatggtgaggaataaaataattggaaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaat |
27929502 |
T |
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| Q |
321 |
ggaacttgagccacgaagagctccagataatgaag |
355 |
Q |
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| T |
27929501 |
ggaacttgagccacgaagagctccagataatgaag |
27929467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 28082037 - 28082370
Alignment:
| Q |
21 |
aaagccttcatgtgaaccatggttttccaccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccaca |
120 |
Q |
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| T |
28082037 |
aaagccttcgtgtgaaccatggttttccgccagttcaaatattaacttatggatatgtgtttgcttgagataagcatccgtaggtggaaaccagtctaca |
28082136 |
T |
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| Q |
121 |
ttgagctagaaaaattcaacatatgtcaggttaaatccatataagcaaccatatgaatcactagggagttactaccaattgaaataatataacttaaaag |
220 |
Q |
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| T |
28082137 |
atgagctagaaaaattcaacatatgtcaggttaaatccatttaagcagccatatgaatcactagggagttactgccaattgaaataatataactttaaaa |
28082236 |
T |
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| Q |
221 |
atatatatggtgaggaataaaataattggaaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaat |
320 |
Q |
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| T |
28082237 |
atataca-agtgaggaacaaaataattggaaaaaagttaaccatgaaaaccacttacaaagttggaacaattggttagtctcagagggttgaaatcaaat |
28082335 |
T |
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| Q |
321 |
ggaacttgagccacgaagagctccagataatgaag |
355 |
Q |
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| T |
28082336 |
ggaacttgagccacgaagagctctagataatgaag |
28082370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 27935861 - 27935698
Alignment:
| Q |
38 |
catggttttccaccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattc |
137 |
Q |
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||||||||| |||||| |||| ||||||| |||||||| ||| ||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||| | |
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| T |
27935861 |
catggtttttcaccagctcaactattaacctatggataagtgttcgtttgaaatacgcctccgcaggtggaaaccagtccacattgagctagaaaaatac |
27935762 |
T |
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| Q |
138 |
aacatatgtcaggttaaatccatataagcaaccatatgaatcactagggagttactaccaattgaaat |
205 |
Q |
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| T |
27935761 |
aaaatatgttaggtcaa----atataagaaactatatgaatgactagggagttactacttattgaaat |
27935698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 356
Target Start/End: Complemental strand, 27935603 - 27935497
Alignment:
| Q |
250 |
aaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagata |
349 |
Q |
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|||||| || ||||||||||||||||||||||||||| |||||| || || | ||||||||||||||| |||||| || | | | |||| |||| ||||| |
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| T |
27935603 |
aaaaaagtcaaccatgaaaaccacttacaaagttggagaacttgattagtatcaaagggttgaaatcagatggaatttcatctaggaagcgctctagata |
27935504 |
T |
|
| Q |
350 |
atgaagt |
356 |
Q |
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| T |
27935503 |
atgaagt |
27935497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 46164600 - 46164457
Alignment:
| Q |
27 |
ttcatgtgaaccatggttttccaccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagc |
126 |
Q |
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|||| ||||||||||||||||||| |||||| |||| | | | ||||| ||| ||||||||||||||| || ||||| ||||||| |||||||||||| |
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| T |
46164600 |
ttcacgtgaaccatggttttccacgagttcagatatcagcctctggatcagtgttcgcttgagataagcttcagcaggcagaaaccagtccacattgagc |
46164501 |
T |
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| Q |
127 |
tagaaaaattcaacatatgtcaggttaaatccatataagcaacc |
170 |
Q |
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| T |
46164500 |
tggaaaaatactagttatgttaggtcaaatccatataagaaacc |
46164457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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