View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_high_2 (Length: 581)
Name: NF9960_1D_high_2
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 24 - 575
Target Start/End: Complemental strand, 39820056 - 39819505
Alignment:
| Q |
24 |
cctttactcgttttcttgccaccaaagcttatccaaatccaaaaactaaattcataatcgtttattcgtttcaatttgttcatattattagtcttctgac |
123 |
Q |
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| T |
39820056 |
cctttactcgttttcttgccaccaaagcttatccaaatccaaaaactaaattcataatcgtttattcatttcaatttgttcatattattagtcttctgac |
39819957 |
T |
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| Q |
124 |
tgtgacattatcaaatagtagtaaggttacagttgtaatggctgcaaatttatatagggtggtccagaaggataggagctttggtcccaaacccttttat |
223 |
Q |
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| T |
39819956 |
tgtgacattatcaaatagtagtaaggttacagttgtaatggctgcaaatttatatagggtggtccagaaggataggagctttggtcccaaacccttttat |
39819857 |
T |
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| Q |
224 |
tggggtagggataatctggcttgtatctttcctttaggtgctcgtaccatgtgaattccaaatgggttggccagaaaatgtttcaaatcttgagaatttt |
323 |
Q |
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| T |
39819856 |
tggggtagggataatctggcttgtatctttcctttaggtgctcgtaccatgtgaattccaaatgggttggccagaaaatgtttcaaatcttgagaatttt |
39819757 |
T |
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| Q |
324 |
tcagttgtatcttgtatgtcctcatttaaggcagattttgtacgtagcaaataagtatacatcataatattagttcctttcataaactttaggttgaacc |
423 |
Q |
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| T |
39819756 |
tcagttgtatcttgtatgtgctcatttaaggcagattttgtacgtagcaaataagtatacatcataatattagttcctttcataaactttaggttgaacc |
39819657 |
T |
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| Q |
424 |
caattggatatatgctagaaagagattgtcggtatgaataaacgaatgttcgcactgctttctttcttctaactcaccgtaattaggatctttaatcttc |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39819656 |
caattggatatatgctagaaagagattgtcggtatgaataaacgaatgttcgcactgctttctttcttctaactcaccgtaattaggatctttaatcttc |
39819557 |
T |
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| Q |
524 |
ggtaggagcctcatggtgtccccatagcttagtccagtttggtaactccata |
575 |
Q |
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| T |
39819556 |
ggtaggagcctcatggtgtccccatagcttagtccagtttggtaacaccata |
39819505 |
T |
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