View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_high_5 (Length: 489)

Name: NF9960_1D_high_5
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_high_5
NF9960_1D_high_5
[»] chr4 (7 HSPs)
chr4 (32-482)||(24692235-24692684)
chr4 (233-431)||(24731949-24732145)
chr4 (276-431)||(24723232-24723387)
chr4 (32-152)||(24731672-24731792)
chr4 (32-152)||(24723047-24723167)
chr4 (214-381)||(24764199-24764365)
chr4 (32-128)||(24763919-24764015)


Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 32 - 482
Target Start/End: Original strand, 24692235 - 24692684
Alignment:
Q  32 ttgctcactcagacagttgttccagcagcttcgtcggacccttacctgcgagtgacgtttaccttctctcctaatgaggtactcatcacattttcttttg 131  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||    
T  24692235 ttgctcacccagacagttgttccagcagcttcgtcggacccttacctgcgagtgacatttaccttctcttctaatgaggtactcatcacatttacttttg 24692334  T
Q  132 gcatctcatttcaccacatatcctctattgataggttttgggcctttgaaatcataaatttcaaatgctacttttttagccatatttaagaaaccagcaa 231  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24692335 gcatctcatttaaccacatatcctctattgataggttttggacctttgaaatcataaatttctaatgctacttttttagccatatttaagaaaccagcaa 24692434  T
Q  232 cacatgtagtctaagaccctctatattttccttctacagcttacatcatttcaaaacttgatttctgcagaaaactgggacttcatccacattgaacttt 331  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24692435 cacatgtagtctaagaccctctatattttccttctacaacttatatcatttcaaaacttgatttctgcagaaaactgggacttcatccacattgaacttt 24692534  T
Q  332 cgtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctgaatctgtctttatttccct 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  24692535 cgtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctgaacctgtctttaattccct 24692634  T
Q  432 agaatgtttaatcaccttgaaaaagaacaagctcttaggacattcatatca 482  Q
    ||||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  24692635 agaatgtataatcaccttg-aaaagaacaagctcttaggccattcatatca 24692684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 233 - 431
Target Start/End: Original strand, 24731949 - 24732145
Alignment:
Q  233 acatgtagtctaagaccctctatattttccttctacagcttacatcatttcaaaacttgatttctgcagaaaactgggacttcatccacattgaactttc 332  Q
    ||||||||| ||| | ||| ||||||||||||||||  ||||  |||| |||||||||||  | |||||| |||||||||||| || |||||||||||||    
T  24731949 acatgtagtataaaatcctatatattttccttctactactta--tcatatcaaaacttgaaatgtgcagacaactgggacttcgtcaacattgaactttc 24732046  T
Q  333 gtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattctgaagctttatctcttccagctccaggtctgaatctgtctttatttccct 431  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  24732047 gtgtaccatcttggagtcacgcagatggtgccaaggcgatattgaattctgaaactttatctcttccagctccaggtctgaatctctctttacttccct 24732145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 276 - 431
Target Start/End: Original strand, 24723232 - 24723387
Alignment:
Q  276 atcatttcaaaacttgatttctgcagaaaactgggacttcatccacattgaactttcgtgtaccatcttggagtcacgcagacggtgccaaggcgatatt 375  Q
    |||||||||||||||||  | |||||  || ||||||||| || ||||||||||||||| ||||||| |||| ||  ||| | |||||||||||  ||||    
T  24723232 atcatttcaaaacttgaaatgtgcaggcaattgggacttcgtcaacattgaactttcgtataccatcatggactcttgcaaatggtgccaaggcactatt 24723331  T
Q  376 gaattctgaagctttatctcttccagctccaggtctgaatctgtctttatttccct 431  Q
    |||||||||| ||||| |||| |||||||||||||||||||| |||||||||||||    
T  24723332 gaattctgaaactttacctctgccagctccaggtctgaatctatctttatttccct 24723387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 24731672 - 24731792
Alignment:
Q  32 ttgctcactcagacagttgttccagcagcttcgtcggacccttacctgcgagtgacgtttaccttctctcctaatgaggtactcatcacattttcttttg 131  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||  || ||||||||   ||    
T  24731672 ttgctcactcagacagttgttccggctgcttcatcggacccttacctacgagtgacatttaccttttctcctaatgaggtacctattacattttcagatg 24731771  T
Q  132 gcatctcatttcaccacatat 152  Q
    | |||||||||  ||||||||    
T  24731772 gaatctcatttagccacatat 24731792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 24723047 - 24723167
Alignment:
Q  32 ttgctcactcagacagttgttccagcagcttcgtcggacccttacctgcgagtgacgtttaccttctctcctaatgaggtactcatcacattttcttttg 131  Q
    ||||||||||||||||||||||||||  ||||||||||||||| ||| |||| ||| |||||||||||||||| || |||||  || |||||||||| |     
T  24723047 ttgctcactcagacagttgttccagcttcttcgtcggaccctttcctacgagcgacatttaccttctctcctactgcggtacctattacattttcttatt 24723146  T
Q  132 gcatctcatttcaccacatat 152  Q
    |||||| ||||  ||||||||    
T  24723147 gcatctaatttagccacatat 24723167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 214 - 381
Target Start/End: Original strand, 24764199 - 24764365
Alignment:
Q  214 tatttaagaaaccag-caacacatgtagtctaagaccctctatattttccttctacagcttacatcatttcaaaacttgatttctgcagaaaactgggac 312  Q
    ||||||||||||||  ||| ||||||| | ||| | |||  |||||||||||| ||| ||||  ||||||||||||||||  | ||||||||||||||||    
T  24764199 tatttaagaaaccaaacaaaacatgtaatataatatcctgaatattttccttcgacaactta--tcatttcaaaacttgaaatatgcagaaaactgggac 24764296  T
Q  313 ttcatccacattgaactttcgtgtaccatcttggagtcacgcagacggtgccaaggcgatattgaattc 381  Q
    ||| || || |||||||| ||| |||||||||||| || ||| |  ||||||||||||| |||||||||    
T  24764297 ttcgtcaacgttgaacttccgtctaccatcttggactctcgcgggtggtgccaaggcgaaattgaattc 24764365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 24763919 - 24764015
Alignment:
Q  32 ttgctcactcagacagttgttccagcagcttcgtcggacccttacctgcgagtgacgtttaccttctctcctaatgaggtactcatcacattttctt 128  Q
    ||||||| ||| ||||||||||| || ||||||| |||||||||||| |||||||| ||||  |||||||||||||||||||  || ||||||||||    
T  24763919 ttgctcaatcaaacagttgttcctgctgcttcgtgggacccttacctacgagtgacatttaatttctctcctaatgaggtacctataacattttctt 24764015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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