View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_1D_high_8 (Length: 431)
Name: NF9960_1D_high_8
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 426
Target Start/End: Original strand, 27928873 - 27929283
Alignment:
| Q |
16 |
ggacatcataatggtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27928873 |
ggacatcataatggtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcag |
27928972 |
T |
|
| Q |
116 |
tgtccattttgtcaactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataaccaaccatcttctga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27928973 |
tgtccattttgtcaactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataaccaaccatcttctga |
27929072 |
T |
|
| Q |
216 |
aattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacttctcatcaagattcttgaatatgccttttctccccgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27929073 |
aattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacctctcatcaagattcttgaatatgccttttctccccgtt |
27929172 |
T |
|
| Q |
316 |
gaggtatgttttgcttacattttaacagcatgccgattaatatcagagacaattattctttctttaaacatttatttttgctcaattgttttcttttcgc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
27929173 |
gaggtatgttttgcttacattttaacagcatgctgattaatatcagagacaattattctttctttaaacatttatttttgctcaattgttttctttttgc |
27929272 |
T |
|
| Q |
416 |
aagtcccgtta |
426 |
Q |
| |
|
||||||||||| |
|
|
| T |
27929273 |
aagtcccgtta |
27929283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 28082964 - 28082558
Alignment:
| Q |
16 |
ggacatcataatggtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28082964 |
ggacatcataatggtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcag |
28082865 |
T |
|
| Q |
116 |
tgtccattttgtcaactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataaccaaccatcttctga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28082864 |
tgtccattttgtcaactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataatcaaccatcttctga |
28082765 |
T |
|
| Q |
216 |
aattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacttctcatcaagattcttgaatatgccttttctccccgtt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
28082764 |
aattgacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacctctcatcaagattctttaatatgcattttctccccgtt |
28082665 |
T |
|
| Q |
316 |
gaggtatgttttgcttacattttaacagcatgccgattaatatcagagacaattattctttctttaaacatttatttttgctcaattgttttcttttcgc |
415 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
28082664 |
gaggtatgtcttgcttacattttaacagcatgctgattaatatcagagacaattattctttctttaaacatttctttttgctcaattgttttctttttgc |
28082565 |
T |
|
| Q |
416 |
aagtccc |
422 |
Q |
| |
|
||||||| |
|
|
| T |
28082564 |
aagtccc |
28082558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 27934806 - 27935177
Alignment:
| Q |
20 |
atcataatggtctgaaagaccttgtgcaaaggtatttttgagcttctgaatgacacttgcctgcattaaatttccttctcttctttaacttatcggtgtc |
119 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||| | ||| |||||||| |||| ||| | || ||| ||||| |
|
|
| T |
27934806 |
atcatagtggtctgaaagatcttgtgcaaaggtatttt-gagcttctcaatgacacttccatgccttaaatttgcttcactttct---ctaatcagtgtc |
27934901 |
T |
|
| Q |
120 |
cattttgtcaactgttactttgctactccttaaatgtgtttgtattattactttgctccattttgtcagtgagttatataaccaaccatcttctgaaatt |
219 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||| | |||||||||| ||||| | | ||||||||| ||| || | ||| ||||||||| |
|
|
| T |
27934902 |
cattgtgtcaactattactttgctactccgtaaatttatttgtattatcactttaaaagaataagtcagtgagctatttattgacttatcatctgaaatt |
27935001 |
T |
|
| Q |
220 |
gacagttatttgtctgaagaatggaaagataggaagaaggatacatatggagaagacttctcatcaagattcttgaatatgccttttctccccgttgagg |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||| || ||||| |||||||||| |||||||||||||||||||||||| |||||||| | || || |
|
|
| T |
27935002 |
tacagttatttgtgtgaagaatggaaagagaggaagatgggtacatgtggagaagacctctcatcaagattcttgaatatgcgttttctccaagctgcgg |
27935101 |
T |
|
| Q |
320 |
tatgttttgcttacattttaacagcatgccgattaatatcagagacaattattctttctttaaacatttatttttg |
395 |
Q |
| |
|
||| ||||||||||||| ||||||||| |||||| | ||||||||| ||||||||| || ||||||| |||||| |
|
|
| T |
27935102 |
tattacttgcttacattttcacagcatgctgattaaaaccagagacaaatattctttcgtttaacatttctttttg |
27935177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University