View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_high_9 (Length: 429)
Name: NF9960_1D_high_9
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 9072877 - 9073258
Alignment:
| Q |
22 |
tcagaaataatgaggatggagtttggggaattgtgtaatggaaacaatgacaattagtgataattaattagtggaaaatgggaattgaagaagaatgagg |
121 |
Q |
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| T |
9072877 |
tcagaaataatgaggatggagtttggggaattgagtaatggaaacaatgacaattagtgataattaattagtggaaaatgggaattgaagaagaatgagg |
9072976 |
T |
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| Q |
122 |
ttttggtgtcttttgctaagattatttatgaggttttggaggaaagtgaatgtttggagcatcattgaacgtcgtatgcaccatgcatgtaactaaaaag |
221 |
Q |
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| T |
9072977 |
ttttggtgtcttttgctaa-attatttatgaggttttggaggaaagtgaatgtttggagcatcattgaacgtcgtatgcaccatgcatgtaactaaaaag |
9073075 |
T |
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| Q |
222 |
atttgttggatcggttacaatttggaagaatcaagattttatatagaatagaatactgttaatatataattgtatgcattaacatttttaaatgaagggt |
321 |
Q |
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| T |
9073076 |
atttgttggatcggttacaattttgaagaatcaagattttatatagaatagaatactgtta----ataattgtatgcattaacatttttaaatgaagggt |
9073171 |
T |
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| Q |
322 |
ataacaccttcgccctataaagtttcaagagcatccattcattctttcaccaatcttgttggagcaaatcaattagggttctgagct |
408 |
Q |
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| T |
9073172 |
ataacaccttcgccctataaagtttcaagagcatccattcattctttcaccaatcttgttggagcaaatcaattagggttctgagct |
9073258 |
T |
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