View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_10 (Length: 432)
Name: NF9960_1D_low_10
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 28937526 - 28937936
Alignment:
| Q |
1 |
gacacctaaatctatggacatcattaaattatctcactttaccatccatgttactattccatggtattggaatgactccacgacaataatctccnnnnnn |
100 |
Q |
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||||| |||||||||||||| |||||||||||||||||||| || ||||||||||| ||||||| |||||||||||||||| ||||| |||| |
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| T |
28937526 |
gacacataaatctatggacaatattaaattatctcactttactatagatgttactattacatggtagtggaatgactccacgagaataacctccaaaaaa |
28937625 |
T |
|
| Q |
101 |
ntgaaataatataattaatataatgtatatattgaacaactctttttctgaatacataaattaattaaactctcaaattagcttataattaaaactaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28937626 |
atgaaataatataattaatataatgtatatattgaacaactctttttctgaatacataaattaattaaactctcaaattagcttataattaaaactaatt |
28937725 |
T |
|
| Q |
201 |
tgtaaaaaatgttagatactgaaattcaatcaaaagggggtggaagaagcaattcatgtttctgctgtttcagacttttcttctgcctgtgcctcagttt |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28937726 |
tgtaaaaaatgttaaatactgaaattcaatcaaaagggggtggaagaagcaattcatgtttctgctgtttcagacttttcttctgcctgtgcctcagttt |
28937825 |
T |
|
| Q |
301 |
cttctggttttgatggttcttcctcatcagccggttcaggtggtggagtggaattctttttgtttgcagcagcttgaagcacatgattgtagtttccttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28937826 |
cttctggttttgatggttcttcctcatcagccggttcaggtggtggagtggaattctttttgtttgcagcagcttgaagcacatgattgtagtttccttt |
28937925 |
T |
|
| Q |
401 |
ctccatgaaaa |
411 |
Q |
| |
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| T |
28937926 |
ctccatgaaaa |
28937936 |
T |
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