View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_20 (Length: 345)
Name: NF9960_1D_low_20
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 28591510 - 28591206
Alignment:
| Q |
19 |
acatcacatttatctcaatcttccttaattaatcctcataaaccaactaattaataactcctcttataagctcaaactctcatacaaatttagttatttg |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591510 |
acatcacatttatcttaatcttccttaattaatcctcataaaccaactaattaataactcctcttataagctcaaactctcatacaaatttagttatttg |
28591411 |
T |
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| Q |
119 |
acttttacactctatttgtttctttgcgcggaaaaaccgttaaatttgaaaatggcttcttctaattctactaacttgcttacgtttcctttgtctccaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28591410 |
acttttacactctatttgtttctttgcgcggaaaaaccgttaaatttgaaaatggcttcttctaattctactaacttgcttacgtttcctttgtctccaa |
28591311 |
T |
|
| Q |
219 |
ctgaactgcttaactcacattttcctcaattccacaccgactctcattacgataacttctatgtcaatgccaatggtaacttaactcttacgccattttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28591310 |
ctgaactgcttaactcacattttcctcaattccacaccgactctcattacgataacttctatgtcaatgccaatggtaacttaactctaacgccattttt |
28591211 |
T |
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| Q |
319 |
caact |
323 |
Q |
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||||| |
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| T |
28591210 |
caact |
28591206 |
T |
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