View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_21 (Length: 343)
Name: NF9960_1D_low_21
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 132 - 321
Target Start/End: Original strand, 10028006 - 10028195
Alignment:
| Q |
132 |
atattaggtgtgttacatatcttaacttgttaaattttcaatcaatggtgaatgaaacactatgtaaatgtgttgatttataattttccggatagtagaa |
231 |
Q |
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| T |
10028006 |
atattaggtgtgttacgtatcttaacttgttaaattttcaataaatggtgaatgaaacactatgtagatgtgttgatttataattttccggatagtagaa |
10028105 |
T |
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| Q |
232 |
catgaagattttcacaattaattttaatttatgtgcttacttttgttacatcacttgcttgaataattatgaaatatatatgcttaatgg |
321 |
Q |
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| T |
10028106 |
catgaagattttcacaattaattttaatttatgtgcttacttttgttacatcacttgcttgaataattatgaaatatgtatgcttaatgg |
10028195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 136 - 260
Target Start/End: Original strand, 10047861 - 10047986
Alignment:
| Q |
136 |
taggtgtgttacata-tcttaacttgttaaattttcaatcaatggtgaatgaaacactatgtaaatgtgttgatttataattttccggatagtagaacat |
234 |
Q |
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| T |
10047861 |
taggtgtgttacgtaatcttaacttgttagattttcaatcaatggtgaatgaaacactatgtagatgtgttgatttaatattttccggatagtagaacat |
10047960 |
T |
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| Q |
235 |
gaagattttcacaattaattttaatt |
260 |
Q |
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| T |
10047961 |
gaagattttcacaattaattttaatt |
10047986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 10027864 - 10027965
Alignment:
| Q |
1 |
tcaattgtcctatactttattatatatgttgagtataatattgtatgtactaattcatgataaaataatttcagcgtagaaatgagatatagctgtgtta |
100 |
Q |
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| T |
10027864 |
tcaattgtcttatactttattatatattttgagtataatattgtatgtactaattcatgatcaaataatttcagcgtagaaatgagatatagctgtgtta |
10027963 |
T |
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| Q |
101 |
tg |
102 |
Q |
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| T |
10027964 |
tg |
10027965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 10047717 - 10047818
Alignment:
| Q |
1 |
tcaattgtcctatactttattatatatgttgagtataatattgtatgtactaattcatgataaaataatttcagcgtagaaatgagatatagctgtgtta |
100 |
Q |
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| T |
10047717 |
tcaattgtcttatactttattatatattttgagtataatattgtatgtactaattcatgatcaaataatttcagcgtagaaatgagatatagctgtgtta |
10047816 |
T |
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| Q |
101 |
tg |
102 |
Q |
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|| |
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| T |
10047817 |
tg |
10047818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 10062053 - 10062148
Alignment:
| Q |
156 |
acttgttaaattttcaatcaatggtgaatgaaacactatgtaaatgtgttgatttataattttccggatagtagaacatgaagattttcacaatta |
251 |
Q |
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| T |
10062053 |
acttgttaaatttttgagtaatgatgaatgacacactaagtagatgttttgatttataactttccggatagttgaacaggaggattttcccaatta |
10062148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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