View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_23 (Length: 312)
Name: NF9960_1D_low_23
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 37137189 - 37137496
Alignment:
| Q |
1 |
gtgcatttgaacataatttgcataactaatctgaaaattatgattaattacattcacattcgttattaatcaattgtctacagtatttggttaattagtc |
100 |
Q |
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| T |
37137189 |
gtgcatttgaacataatttgcataactaatctgaaaattatgattaattacattcacattcgttattaattaattgtctacagtatttggttaattagtc |
37137288 |
T |
|
| Q |
101 |
gtgacatcttgttagattccttaactaattgtgtcaagtaaaatatttgaattgcattaaccatatagtagtttgagtgtcaaaataacaccactcttct |
200 |
Q |
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| T |
37137289 |
gtgacatcttgttagattccttaactaattgtgtcaagtaaaatatttgaattgcattaaccatatagtagtttgagtgtcaaaataacaccactcttct |
37137388 |
T |
|
| Q |
201 |
gaatatcattttgaagagagtcgcaaaatttcacctcattggacaaaatttcacatgatggtatataagagaatccgggaatgtcaaaagagtagttgaa |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37137389 |
gaatatcattttgaagagagtcgcaaaacttcacctcattggacaaaatttcacatgatggtatataagagaatccgggaatgtcaaaagagtagttgaa |
37137488 |
T |
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| Q |
301 |
agtataat |
308 |
Q |
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|||||||| |
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| T |
37137489 |
agtataat |
37137496 |
T |
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