View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_24 (Length: 310)
Name: NF9960_1D_low_24
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 50 - 293
Target Start/End: Complemental strand, 53788552 - 53788310
Alignment:
| Q |
50 |
ttgttgtgtagaaagtgtgaattaaaagtttcaccttacttnnnnnnntggggattgaattttataaattataggatccataaaattcaatatcttaagg |
149 |
Q |
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| T |
53788552 |
ttgttgtgtagaaagtgtgaattaaaagtttcacgttacttagaaaaatggggattgaattttataaattataggacccataaa-tccaatatcttaagg |
53788454 |
T |
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| Q |
150 |
ttttatgttaaagtgtggtgttcgactcacttatattgggatccccggttctcacacttcacatcatagcaaagatagagtgagtgggtaccattactca |
249 |
Q |
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| T |
53788453 |
ttttaggttaaagtgtggtgttggactcacttatattgggattcccggttctcacacttcacatcatagcaaagatagagtgagtgggtaccattactca |
53788354 |
T |
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| Q |
250 |
ccacgttttcttagccaaagttcaactctattagtttaagatga |
293 |
Q |
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| T |
53788353 |
ccacggtttctcagccaaagttcaactctattagtttaagatga |
53788310 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 53
Target Start/End: Original strand, 37620974 - 37621005
Alignment:
| Q |
22 |
gaaccttgccagtaatgttagataaagtttgt |
53 |
Q |
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| T |
37620974 |
gaaccttgccagtaatgttagataaagtttgt |
37621005 |
T |
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