View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_26 (Length: 291)
Name: NF9960_1D_low_26
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 2912258 - 2912511
Alignment:
| Q |
16 |
agtttgaggtacataggtagagtgttgtaccaaactgcaatgagaacgtttcagggcatgaaagatcaaagctcaaagtgtgattcaacaatcaagtctc |
115 |
Q |
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| T |
2912258 |
agtttgaggtacataggtagagtgttgtaccaaactgcaatgagaacgtttcagggcatgaaagatcaaagctcaaagtgtgattcaacaatcaagtctc |
2912357 |
T |
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| Q |
116 |
taagggattctacttcttcaaagcaagtcaaggctagggttttctcaaataatactgcttttgaaaattcatcttctgctttcaaaggtagcaacagtga |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912358 |
taagggattctacttcttcaaagcaagttaaggctagggttttctcaaataatactgcttttgaaaattcatcttctgctttcaaaggtagcaacagtga |
2912457 |
T |
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| Q |
216 |
caaggtaaaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctg |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2912458 |
caaggtaaaacgtgctgaagagtctcttaggactgtcatgtacttgagctgctg |
2912511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 38025146 - 38025180
Alignment:
| Q |
235 |
gagtctcttaggactgtcatgtacttgagctgctg |
269 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
38025146 |
gagtctctaaggactgtcatgtacttgagctgctg |
38025180 |
T |
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