View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_1D_low_28 (Length: 278)
Name: NF9960_1D_low_28
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 37137499 - 37137736
Alignment:
| Q |
3 |
acaagctaaaaggatgaattcagcatgtgagcagaatgaataaatgggtttgagttttgagtataataatgattggtttgagtttgagagtagattacct |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37137499 |
acaagctaaaaggatgaattcagcatgtgagcagaataaataaatgggtttgagttttgagtataataacgattggtttgagtttgagagtagattacct |
37137598 |
T |
|
| Q |
103 |
ggaagtgatgaggtttgagattttccttgagaagatgctgaagggaattgtagccacaaatagaaccatccccatacttagagagcttgagttgttcatt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37137599 |
ggaagtgatgaggtttgagattttccttgagaagatgctgaagggaattgtagccacaaatagaaccatccccatacttagagagcttgagttgttcatt |
37137698 |
T |
|
| Q |
203 |
ctctgctctattttcggacttgtccatctccgttttga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37137699 |
ctctgctctattttcggacttgtccatctccgttttga |
37137736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 37141469 - 37141542
Alignment:
| Q |
99 |
acctggaagtgatgaggtttgagattttccttgagaagatgctgaagggaattgtagccacaaatagaaccatc |
172 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
37141469 |
acctggaaatgatgcggtttaagattgtccttgagaagatggtgaagggaatcgtagccacaaatagaaccatc |
37141542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 37137758 - 37137786
Alignment:
| Q |
236 |
tttgaacactcttctttgctgtgatgatg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37137758 |
tttgaacactcttctttgctgtgatgatg |
37137786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 264
Target Start/End: Original strand, 904251 - 904383
Alignment:
| Q |
129 |
ttgagaagatgctgaagggaattgtagccacaaatagaaccatccccatacttagagagcttgagttgttcattctctgctctattttcggacttgtcca |
228 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| | |||| |||| |||||| |||| |
|
|
| T |
904251 |
ttgagaagatgttgaagggaattgtagccacaaatagaaccacactcatatttagagagcttgagttgttcattctgttctctgttttgggacttatcca |
904350 |
T |
|
| Q |
229 |
tctccgttttgaacactcttctttgctgtgatgatg |
264 |
Q |
| |
|
||| |||| || |||||||||||| ||||||||| |
|
|
| T |
904351 |
tctgcgtt---aatactcttctttgcggtgatgatg |
904383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University