View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_31 (Length: 263)
Name: NF9960_1D_low_31
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 49866183 - 49866414
Alignment:
| Q |
17 |
attcaactttaactaagcatcggcgatgtgttttggaaagacaaacatcatattaagatcttgaaaacttccaaatttcagcagggaacattttgaaaag |
116 |
Q |
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| T |
49866183 |
attcaactttaaccaagcatcggcgatgtgtttcggaaagccaaacatcatataaagatcttgaaaacttccaaatttcagcagggaacattttgaaaag |
49866282 |
T |
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| Q |
117 |
atgaagtaagatacaaaacatatccataaactgactttatatgttactgtcttgaccaaatcctcaaaaactgcaagtcaaatacattctattaaaataa |
216 |
Q |
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| T |
49866283 |
atgaagtaagatacaaaacatatccataaactgactttatatgttagtgtcttgaccaaatcctcaaaaactgcaagtcaaatacattctattaaaataa |
49866382 |
T |
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| Q |
217 |
tagaacatatattctaaaactctcaaagaaag |
248 |
Q |
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| T |
49866383 |
tagaacatatattctaaaactctcaaagaaag |
49866414 |
T |
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