View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_32 (Length: 261)

Name: NF9960_1D_low_32
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_32
NF9960_1D_low_32
[»] chr1 (12 HSPs)
chr1 (1-254)||(7953007-7953260)
chr1 (168-241)||(21970583-21970656)
chr1 (77-252)||(12170567-12170742)
chr1 (182-241)||(23294970-23295029)
chr1 (186-240)||(9875268-9875322)
chr1 (173-230)||(6493667-6493724)
chr1 (169-238)||(40197639-40197708)
chr1 (182-234)||(28062132-28062184)
chr1 (180-238)||(42750584-42750642)
chr1 (191-240)||(24615924-24615973)
chr1 (180-224)||(32351918-32351962)
chr1 (180-224)||(48435640-48435684)
[»] chr7 (7 HSPs)
chr7 (5-241)||(44162659-44162891)
chr7 (80-241)||(41448246-41448407)
chr7 (95-238)||(31053072-31053215)
chr7 (161-234)||(12829003-12829076)
chr7 (180-224)||(13441548-13441592)
chr7 (168-234)||(6230305-6230371)
chr7 (191-224)||(37074188-37074221)
[»] chr2 (7 HSPs)
chr2 (11-241)||(33483254-33483484)
chr2 (123-251)||(16078542-16078670)
chr2 (158-230)||(40919348-40919420)
chr2 (168-242)||(30433686-30433760)
chr2 (173-241)||(44691280-44691348)
chr2 (191-224)||(21966184-21966217)
chr2 (175-228)||(44515285-44515338)
[»] chr4 (9 HSPs)
chr4 (80-234)||(8506206-8506360)
chr4 (94-241)||(29081196-29081343)
chr4 (170-234)||(22906476-22906540)
chr4 (170-234)||(22958144-22958208)
chr4 (173-230)||(46661447-46661504)
chr4 (180-224)||(20676525-20676569)
chr4 (168-226)||(50434974-50435032)
chr4 (173-230)||(46615796-46615853)
chr4 (170-230)||(43443238-43443298)
[»] chr8 (6 HSPs)
chr8 (94-238)||(44682518-44682662)
chr8 (179-230)||(4902026-4902077)
chr8 (180-224)||(16374709-16374753)
chr8 (79-234)||(25660020-25660175)
chr8 (163-225)||(19380966-19381027)
chr8 (188-254)||(29576737-29576803)
[»] chr6 (6 HSPs)
chr6 (168-238)||(14457420-14457490)
chr6 (170-234)||(24568721-24568785)
chr6 (168-234)||(20987162-20987228)
chr6 (182-234)||(15841757-15841809)
chr6 (188-224)||(15675322-15675358)
chr6 (179-230)||(20792742-20792793)
[»] chr3 (2 HSPs)
chr3 (110-230)||(49454915-49455035)
chr3 (191-234)||(28518894-28518937)
[»] chr5 (4 HSPs)
chr5 (95-220)||(1158953-1159078)
chr5 (14-135)||(16648650-16648771)
chr5 (168-228)||(3680173-3680233)
chr5 (94-230)||(40085090-40085226)
[»] scaffold0263 (1 HSPs)
scaffold0263 (188-240)||(8232-8284)
[»] scaffold0014 (1 HSPs)
scaffold0014 (185-238)||(92180-92232)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7953007 - 7953260
Alignment:
Q  1 agggtgtctttacaagttgcttgcgaaggttctagcaagaagatttgccggggttgtgaactccatcatttcatccaatcaatcggggtttcataaaggt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7953007 agggtgtctttacaagttgcttgtgaaggttctagcaagaagattggtcggggttatgaactccatcatttcatccaatcaatcggggtttcataaaggt 7953106  T
Q  101 agaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgactttgaaaagg 200  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7953107 agaaatttggtggatggagttgtggtgattaatgtattggtggattatgccaaaacggcgaaaaaacaatgtttgatccttaaggttgactttgaaaagg 7953206  T
Q  201 cttatgattcggtggattggggttttttggagtacatgttgatgggagtggggt 254  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  7953207 cttatgactcggtggattggggttttttggagtacatgttgatgagagtggggt 7953260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 21970583 - 21970656
Alignment:
Q  168 aatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatgttg 241  Q
    |||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||| ||| ||||||    
T  21970583 aatgtttgattcttaaggtggactttgagaaggcttacgattcggtggattggggttttttggtgtatatgttg 21970656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 252
Target Start/End: Original strand, 12170567 - 12170742
Alignment:
Q  77 aatcaatcggggtttcataaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttga 176  Q
    |||||||||| ||||| ||| || || ||||| |||||||| || ||||| ||||||||| | |||||||| ||||| |     |||||  | || ||||    
T  12170567 aatcaatcggcgtttcttaaggggaggaatttggtggatggggtggtggttattaatgaaattgtggattacgctaagaaatttaaaaaggagtgcttga 12170666  T
Q  177 tccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatgttgatgggagtggg 252  Q
    | ||||||||||| |||||||||||||| || || ||||||||||| ||||||| ||| ||| ||| | |||||||    
T  12170667 tacttaaggttgattttgaaaaggcttacgactccgtggattgggggtttttggtgtatatgatgaggagagtggg 12170742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 23295029 - 23294970
Alignment:
Q  182 aaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatgttg 241  Q
    ||||| || |||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  23295029 aaggtggattttgaaaaggcttatgattctgtggattggggatttttggaatacatgttg 23294970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 240
Target Start/End: Complemental strand, 9875322 - 9875268
Alignment:
Q  186 ttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatgtt 240  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  9875322 ttgattttgaaaaggcttatgattcggtggattgaagttttttggagtatatgtt 9875268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 6493667 - 6493724
Alignment:
Q  173 ttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttgg 230  Q
    |||||||||||||| ||||| |||||||| |||| ||||||||| ||| |||||||||    
T  6493667 ttgatccttaaggtagacttcgaaaaggcgtatgtttcggtggaatggagttttttgg 6493724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 40197708 - 40197639
Alignment:
Q  169 atgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatg 238  Q
    ||||||||| ||||| || || || |||||||| |||||||||||||| |||||||||||| | ||||||    
T  40197708 atgtttgattcttaaagtcgatttagaaaaggcgtatgattcggtggagtggggttttttgaaatacatg 40197639  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 28062184 - 28062132
Alignment:
Q  182 aaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    ||||| |||||||||||||| |||||||| || ||||||| ||||||||||||    
T  28062184 aaggtggactttgaaaaggcctatgattccgttgattgggtttttttggagta 28062132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 42750642 - 42750584
Alignment:
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatg 238  Q
    ||||||| || ||||| || || |||||||||||||| ||| |||||||||||||||||    
T  42750642 ttaaggtggattttgagaaagcgtatgattcggtggagtggagttttttggagtacatg 42750584  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 24615973 - 24615924
Alignment:
Q  191 tttgaaaaggcttatgattcggtggattggggttttttggagtacatgtt 240  Q
    ||||||||||| ||||| ||||| |||||||||||||| ||||| |||||    
T  24615973 tttgaaaaggcctatgactcggtagattggggttttttagagtatatgtt 24615924  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 32351918 - 32351962
Alignment:
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||| || ||||| |||||||||||||||||||| |||||||    
T  32351918 ttaaggtggattttgagaaggcttatgattcggtggactggggtt 32351962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 48435684 - 48435640
Alignment:
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||||||||||||||| |||||||| || || ||||||||||    
T  48435684 ttaaggttgactttgaaaaagcttatgactcagtcgattggggtt 48435640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 44162659 - 44162891
Alignment:
Q  5 tgtctttacaagttgcttgcgaaggttctagcaagaagatttgccggggttgtgaactccatcatttcatccaatcaatcggggtttcataaaggtagaa 104  Q
    |||||||| || ||||||||||||||| |||| |||||| |    |||||| |||  || || || ||| | ||||||||||||||||  ||||| ||||    
T  44162659 tgtctttataaattgcttgcgaaggttttagctagaagaat----ggggttatgacatctattatatcaactaatcaatcggggtttctcaaaggaagaa 44162754  T
Q  105 atttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgactttgaaaaggctta 204  Q
    | || || ||||||||  || |||||||||||| |||||| ||||| |||| || |||||||||||||||||| ||||||||||| ||||||||||| |     
T  44162755 acttggttgatggagtcatgatgattaatgaataggtggactatgccaaaaaggtgaaaaaacaatgtttgattcttaaggttgattttgaaaaggcatg 44162854  T
Q  205 tgattcggtggattggggttttttggagtacatgttg 241  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  44162855 tgattcggtggattggggtttcttggtgtacatgttg 44162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 241
Target Start/End: Original strand, 41448246 - 41448407
Alignment:
Q  80 caatcggggtttcataaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatcc 179  Q
    ||||||| ||||| |||||| || ||||| |||||||||||| ||||||||||| |  | || ||||||||||| |  || ||     | ||| ||||||    
T  41448246 caatcggcgtttcttaaagggaggaatttggtggatggagttatggtgattaataagctagtagattatgctaagaaagcaaagcgtaagtgtgtgatcc 41448345  T
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatgttg 241  Q
    |||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||||||    
T  41448346 ttaaggttgattttgaaaaggcttacgattcggtcgattgggggtttttggagtatatgttg 41448407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 238
Target Start/End: Original strand, 31053072 - 31053215
Alignment:
Q  95 aaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgactttg 194  Q
    |||||||||||||| || ||||| || |||||||| |||||  | || || |  ||||||| | |||||| | ||||||||||  | ||||| || ||||    
T  31053072 aaaggtagaaatttagttgatggcgtggtggtgataaatgaggttgttgacttagctaaaaagccgaaaagagaatgtttgattttgaaggtggattttg 31053171  T
Q  195 aaaaggcttatgattcggtggattggggttttttggagtacatg 238  Q
    |||| |||||||||||||| |||||||| |||||||| ||||||    
T  31053172 aaaaagcttatgattcggtagattggggctttttggaatacatg 31053215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 12829076 - 12829003
Alignment:
Q  161 aaaaaacaatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    |||||||||||||||||  ||||||| |  ||||||||||  |||||||||||||||||| |||||||||||||    
T  12829076 aaaaaacaatgtttgatttttaaggtgggttttgaaaaggtatatgattcggtggattggagttttttggagta 12829003  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 13441592 - 13441548
Alignment:
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||| || |||||||||||||||||||||||||| |||||||    
T  13441592 ttaaggtggattttgaaaaggcttatgattcggtggactggggtt 13441548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 6230305 - 6230371
Alignment:
Q  168 aatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    ||||||| ||||| || || || ||||||||||| |||||| ||||||||||| |||| ||||||||    
T  6230305 aatgtttaatcctaaaagtagattttgaaaaggcgtatgatacggtggattggagtttcttggagta 6230371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 37074188 - 37074221
Alignment:
Q  191 tttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||||||||||||| ||||||||||||||||    
T  37074188 tttgaaaaggcttatgactcggtggattggggtt 37074221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 33483254 - 33483484
Alignment:
Q  11 tacaagttgcttgcgaaggttctagcaagaagatttgccggggttgtgaactccatcatttcatccaatcaatcggggtttcataaaggtagaaatttcg 110  Q
    ||||||||||| || |||||  |||| |||||||| | ||| ||| |||| || || ||||| |||||||||||||  || | |||||| |||||||| |    
T  33483254 tacaagttgctagcaaaggtattagctagaagattggtcggtgttatgaattctattatttcttccaatcaatcggctttccttaaagggagaaatttgg 33483353  T
Q  111 tggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgactttgaaaaggcttatgattc 210  Q
    ||||||||||  |||| ||  |||| |||||||||||||| || |  ||||||    | ||||||||||| |||||||| ||||||||||||||||| ||    
T  33483354 tggatggagtcatggtaatagatgagttggtggattatgccaagaaagcgaaacgtaagtgtttgatcctcaaggttgattttgaaaaggcttatgactc 33483453  T
Q  211 ggtggattggggttttttggagtacatgttg 241  Q
    ||| |||||| ||||||||||||| ||||||    
T  33483454 ggtagattggagttttttggagtatatgttg 33483484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 16078542 - 16078670
Alignment:
Q  123 tggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattgggg 222  Q
    |||||||||||||| ||||||||||||| || | ||| ||     |||| |||||  ||||||| |||||||||||||||||||| |||||||||||| |    
T  16078542 tggtgattaatgaagtggtggattatgcgaagagggctaaccgggaatgcttgatttttaaggtagactttgaaaaggcttatgactcggtggattggag 16078641  T
Q  223 ttttttggagtacatgttgatgggagtgg 251  Q
    |||||||||||| ||||||| | ||||||    
T  16078642 ttttttggagtatatgttgaggagagtgg 16078670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 40919348 - 40919420
Alignment:
Q  158 gcgaaaaaacaatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttgg 230  Q
    ||||||| ||||||||| || |||||||| |||||||||||||||||||| ||| |||||||| |||||||||    
T  40919348 gcgaaaagacaatgtttaattcttaaggtggactttgaaaaggcttatgactcgatggattggagttttttgg 40919420  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 30433760 - 30433686
Alignment:
Q  168 aatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatgttga 242  Q
    |||||||||| || |||||||| ||||| ||||||||||| ||||||| |||||| ||||||||||| |||||||    
T  30433760 aatgtttgattctaaaggttgattttgagaaggcttatgactcggtgggttggggatttttggagtatatgttga 30433686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 44691280 - 44691348
Alignment:
Q  173 ttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatgttg 241  Q
    ||||||||||||||||| || || ||||| || ||||||||||||||| ||||||||||||| ||||||    
T  44691280 ttgatccttaaggttgatttcgagaaggcgtacgattcggtggattggagttttttggagtatatgttg 44691348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 21966217 - 21966184
Alignment:
Q  191 tttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||||||||||||| ||||||||||||||||    
T  21966217 tttgaaaaggcttatgactcggtggattggggtt 21966184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 44515338 - 44515285
Alignment:
Q  175 gatccttaaggttgactttgaaaaggcttatgattcggtggattggggtttttt 228  Q
    |||||||||||||||||| || ||||| ||||| ||||| |||||| |||||||    
T  44515338 gatccttaaggttgacttcgagaaggcgtatgactcggttgattggagtttttt 44515285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 8506360 - 8506206
Alignment:
Q  80 caatcggggtttcataaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatcc 179  Q
    |||||||  |||| ||||||||||||||| |||||||| ||  ||||| | |||||||| ||||| |||||||| |  || || ||| | || |||||      
T  8506360 caatcggcatttcttaaaggtagaaatttagtggatggggtattggtggtgaatgaattagtggactatgctaagaaagctaagaaagattgcttgattt 8506261  T
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    | ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  8506260 tcaaggtggacttcgaaaaggcttatgattcggtggattggggctttttggagta 8506206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 241
Target Start/End: Original strand, 29081196 - 29081343
Alignment:
Q  94 taaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgacttt 193  Q
    |||||||||||| || || ||||  ||  ||||| |||||||||||||||||| |||   ||  || || ||| | ||||| || || ||||| |||||     
T  29081196 taaaggtagaaacttggttgatgatgtgttggtggttaatgaattggtggattttgcgcgaaaagctaagaaagagtgtttaattctaaaggtggacttc 29081295  T
Q  194 gaaaaggcttatgattcggtggattggggttttttggagtacatgttg 241  Q
    |||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  29081296 gaaaaggcatatgactcggtggagtggtgttttttggagtacatgttg 29081343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 22906540 - 22906476
Alignment:
Q  170 tgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    ||||||||| | |||||||||||||| ||||| ||||| || ||||||||||| |||||||||||    
T  22906540 tgtttgatcgtcaaggttgactttgagaaggcatatgactccgtggattgggggtttttggagta 22906476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 22958208 - 22958144
Alignment:
Q  170 tgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    ||||||||| | |||||||||||||| ||||| ||||| || ||||||||||| |||||||||||    
T  22958208 tgtttgatcgtcaaggttgactttgagaaggcatatgactccgtggattgggggtttttggagta 22958144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 46661447 - 46661504
Alignment:
Q  173 ttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttgg 230  Q
    ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||||||||    
T  46661447 ttgattcttaaagttgattttgaaaaggcatacgactcggtggattggggttttttgg 46661504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 20676569 - 20676525
Alignment:
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||| |||||||||||||| |||||||||||||| |||||||    
T  20676569 ttaaggtagactttgaaaaggcatatgattcggtggactggggtt 20676525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 50434974 - 50435032
Alignment:
Q  168 aatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggtttt 226  Q
    |||| ||||| |||||||| || ||||| |||||||||||||||||  |||||||||||    
T  50434974 aatgcttgattcttaaggtggattttgagaaggcttatgattcggttaattggggtttt 50435032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 46615853 - 46615796
Alignment:
Q  173 ttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttgg 230  Q
    ||||| ||||| ||||| ||||||||||| || || |||||||||||||| |||||||    
T  46615853 ttgattcttaaagttgattttgaaaaggcatacgactcggtggattgggggtttttgg 46615796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 43443298 - 43443238
Alignment:
Q  170 tgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttgg 230  Q
    |||||||| || |||||||||||||| ||||| ||||| || || ||||||||||| ||||    
T  43443298 tgtttgattctcaaggttgactttgagaaggcatatgactccgtagattggggtttcttgg 43443238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 238
Target Start/End: Original strand, 44682518 - 44682662
Alignment:
Q  94 taaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgacttt 193  Q
    |||||| ||| |||| |||||||| ||| |||||||||||||  ||||||||| ||| | || ||| ||   | ||||||||||  ||||||| || |||    
T  44682518 taaagggagagatttggtggatggggttatggtgattaatgaggtggtggattttgcaagaagggctaagcgaaaatgtttgatttttaaggtggatttt 44682617  T
Q  194 gaaaaggcttatgattcggtggattggggttttttggagtacatg 238  Q
    ||||||||||| ||| |||| ||||||||||| ||||||||||||    
T  44682618 gaaaaggcttacgatgcggtagattggggtttcttggagtacatg 44682662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 4902026 - 4902077
Alignment:
Q  179 cttaaggttgactttgaaaaggcttatgattcggtggattggggttttttgg 230  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  4902026 cttaaggtggactttgagaaggcttatgattcggtggattggggttttttgg 4902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 16374709 - 16374753
Alignment:
Q  180 ttaaggttgactttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  16374709 ttaaggtggactttgaaaagacttatgattcggtggattggggtt 16374753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 25660020 - 25660175
Alignment:
Q  79 tcaatcggggtttcataaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatc 178  Q
    ||||||||  |||| |||||| || ||||| |||||||  ||  ||||| | || ||||||||||| |||||||| |  | ||| ||  | ||||||||     
T  25660020 tcaatcggcttttcttaaaggaaggaatttggtggatgaggtgttggtggtaaacgaattggtggactatgctaagaaagtgaagaaggagtgtttgata 25660119  T
Q  179 cttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
     | || || |||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  25660120 ttcaaagtagactttgagaaggcgtatgattcggtggattggggtttcttggagta 25660175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 19381027 - 19380966
Alignment:
Q  163 aaaacaatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttt 225  Q
    |||| ||||||||||  | |||||||| |||||||||| | ||||||||||||||||||||||    
T  19381027 aaaagaatgtttgattttcaaggttgattttgaaaaggat-atgattcggtggattggggttt 19380966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 29576803 - 29576737
Alignment:
Q  188 gactttgaaaaggcttatgattcggtggattggggttttttggagtacatgttgatgggagtggggt 254  Q
    ||||||||||| || ||||| |||||||||||| |||||||||| || |||||| |  |||||||||    
T  29576803 gactttgaaaatgcatatgactcggtggattggagttttttggattatatgttgcttagagtggggt 29576737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 14457420 - 14457490
Alignment:
Q  168 aatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatg 238  Q
    |||||||||| |||||||| || || || ||||||||||||||||||||||| |||||||||| |||||||    
T  14457420 aatgtttgattcttaaggtggatttcgagaaggcttatgattcggtggattgaggttttttggtgtacatg 14457490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 24568721 - 24568785
Alignment:
Q  170 tgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    |||||||| ||||| ||||||||||||||| | |||||||||||||||||| | |||||||||||    
T  24568721 tgtttgattcttaaagttgactttgaaaagccatatgattcggtggattggagatttttggagta 24568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 20987162 - 20987228
Alignment:
Q  168 aatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    ||||||| |||||||||||||| ||||| || |||||||||||||| |||||| || ||||||||||    
T  20987162 aatgtttaatccttaaggttgattttgagaaagcttatgattcggttgattggagtattttggagta 20987228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 15841757 - 15841809
Alignment:
Q  182 aaggttgactttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||| |||||    
T  15841757 aaggtggattttgaaaaggcatatgattcggtggattggggttttttagagta 15841809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 15675358 - 15675322
Alignment:
Q  188 gactttgaaaaggcttatgattcggtggattggggtt 224  Q
    ||||||||||||||||||||||||||||| |||||||    
T  15675358 gactttgaaaaggcttatgattcggtggactggggtt 15675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 20792742 - 20792793
Alignment:
Q  179 cttaaggttgactttgaaaaggcttatgattcggtggattggggttttttgg 230  Q
    |||||||| || ||||| |||||||||||||| |||||||||||| ||||||    
T  20792742 cttaaggtggattttgagaaggcttatgattctgtggattggggtattttgg 20792793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 49454915 - 49455035
Alignment:
Q  110 gtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgactttgaaaaggcttatgatt 209  Q
    |||||||||||  |||||||||||||||||||| ||||||| || |  ||||| ||| | ||| | ||  ||||| | |||||||| |||||||||||||    
T  49454915 gtggatggagtgttggtgattaatgaattggtgtattatgcgaagaaagcgaacaaagagtgtcttatttttaagttggactttgagaaggcttatgatt 49455014  T
Q  210 cggtggattggggttttttgg 230  Q
    | || |||||||| |||||||    
T  49455015 cagtcgattggggctttttgg 49455035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 234
Target Start/End: Complemental strand, 28518937 - 28518894
Alignment:
Q  191 tttgaaaaggcttatgattcggtggattggggttttttggagta 234  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  28518937 tttgaaaaggcatatgattccgtggattggggttttttggagta 28518894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 1158953 - 1159078
Alignment:
Q  95 aaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgactttg 194  Q
    |||||||| || || | |||||||||| |||| ||||||||| | || || | |||||| | | ||||  || |||||||||| |||||||| || ||||    
T  1158953 aaaggtaggaacttagcggatggagttttggtaattaatgaaattgttgactttgctaagaagtcgaatgaagaatgtttgattcttaaggtggattttg 1159052  T
Q  195 aaaaggcttatgattcggtggattgg 220  Q
    ||||||| ||||||||||| ||||||    
T  1159053 aaaaggcatatgattcggtagattgg 1159078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 16648650 - 16648771
Alignment:
Q  14 aagttgcttgcgaaggttctagcaagaagatttgccggggttgtgaactccatcatttcatccaatcaatcggggtttcataaaggtagaaatttcgtgg 113  Q
    ||||||||||| |||||| |||| |||||| | ||||| ||  |||| || || || || || || |||||||  |||| |||||| |||||||| ||||    
T  16648650 aagttgcttgcaaaggttttagctagaagaatggccggagtcatgaattctattatctcttctaaccaatcggcttttcttaaagggagaaatttggtgg 16648749  T
Q  114 atggagttgtggtgattaatga 135  Q
    |||||||| |||||||||||||    
T  16648750 atggagttatggtgattaatga 16648771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 3680233 - 3680173
Alignment:
Q  168 aatgtttgatccttaaggttgactttgaaaaggcttatgattcggtggattggggtttttt 228  Q
    ||||||||||||| || || |||||||||||||| |||||| |||| |||||| |||||||    
T  3680233 aatgtttgatcctaaaagtagactttgaaaaggcatatgatacggtagattggagtttttt 3680173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 230
Target Start/End: Original strand, 40085090 - 40085226
Alignment:
Q  94 taaaggtagaaatttcgtggatggagttgtggtgattaatgaattggtggattatgctaaaacggcgaaaaaacaatgtttgatccttaaggttgacttt 193  Q
    |||||| |||||||| |||||||| ||  ||||  | ||||||||||| |||||||| || |  || |||||  | ||||||||  ||||||| ||||||    
T  40085090 taaagggagaaatttggtggatggggtgttggttgtgaatgaattggttgattatgcgaagagagctaaaaaggagtgtttgatttttaaggtggacttt 40085189  T
Q  194 gaaaaggcttatgattcggtggattggggttttttgg 230  Q
    || || || ||||| || || |||||||| |||||||    
T  40085190 gagaaagcatatgactccgtcgattggggatttttgg 40085226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 8284 - 8232
Alignment:
Q  188 gactttgaaaaggcttatgattcggtggattggggttttttggagtacatgtt 240  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||| |||||    
T  8284 gactttgaaaaggcgtatgattcggtggagtggggctttttggagtatatgtt 8232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 238
Target Start/End: Complemental strand, 92232 - 92180
Alignment:
Q  185 gttgactttgaaaaggcttatgattcggtggattggggttttttggagtacatg 238  Q
    ||||| |||||||| |||||||||||||| |||| ||||||||| |||||||||    
T  92232 gttgattttgaaaaagcttatgattcggttgatt-gggtttttttgagtacatg 92180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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