View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_1D_low_34 (Length: 257)
Name: NF9960_1D_low_34
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_34 |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0300 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 3437088 - 3437327
Alignment:
| Q |
18 |
gacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437088 |
gacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctg |
3437187 |
T |
|
| Q |
118 |
cactcagtttcaacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagat |
217 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
3437188 |
cactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgaccaccatactttgtctttagat |
3437287 |
T |
|
| Q |
218 |
gacagccatcaaccccaataaatggcctacatccatttgt |
257 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
3437288 |
gacagccatcaaccccaataaatggcctacatccatttgt |
3437327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 14799020 - 14799077
Alignment:
| Q |
192 |
ttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacat |
249 |
Q |
| |
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|||||| ||||| |||||||| || ||||| |||||||| ||||||||||| |||||| |
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| T |
14799020 |
ttgacctccatattttgtcttcaggtgacacccatcaacaccaataaatggtctacat |
14799077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 15246012 - 15246069
Alignment:
| Q |
192 |
ttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacat |
249 |
Q |
| |
|
|||||| ||||| |||||||| || ||||| |||||||| ||||||||||| |||||| |
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|
| T |
15246012 |
ttgacctccatattttgtcttcaggtgacacccatcaacaccaataaatggtctacat |
15246069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 46240383 - 46240152
Alignment:
| Q |
26 |
ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt |
125 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240383 |
ttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagt |
46240284 |
T |
|
| Q |
126 |
ttcaacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagcca |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
46240283 |
ttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgacccccatactttgtctttagatgacaacca |
46240184 |
T |
|
| Q |
226 |
tcaaccccaataaatggcctacatccatttgt |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
46240183 |
tcaaccccaataaatggcctacatccatttgt |
46240152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 254
Target Start/End: Complemental strand, 23541775 - 23541549
Alignment:
| Q |
28 |
accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt |
127 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||| | ||||||||||||| | | |||||||||||| ||||||||| |||| |||| |||| |
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|
| T |
23541775 |
accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt |
23541676 |
T |
|
| Q |
128 |
caacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc |
227 |
Q |
| |
|
| || || |||||||| | ||||| | |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
23541675 |
ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc |
23541576 |
T |
|
| Q |
228 |
aaccccaataaatggcctacatccatt |
254 |
Q |
| |
|
||||||| |||||| ||||| ||||| |
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|
| T |
23541575 |
taccccaacaaatggtctacacccatt |
23541549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 30038134 - 30038307
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| | ||||||| ||||| || || ||||||||||| |
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|
| T |
30038134 |
taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt |
30038233 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagcaatgagtagttgaccccc |
200 |
Q |
| |
|
||||| | ||||| || || ||||| | |||||||||||||||||| || |||||||| | ||||||||||| |
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|
| T |
30038234 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgaccccc |
30038307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 29878409 - 29878233
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
29878409 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
29878310 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
203 |
Q |
| |
|
||||| | ||||| || || ||||| | |||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
29878309 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccata |
29878233 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 3921199 - 3921357
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| |||||||| |||||||| ||||| ||| || ||||||||||| |
|
|
| T |
3921199 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt |
3921298 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagcaat |
185 |
Q |
| |
|
||||| | ||||| || || ||||| | |||||||||||||||||| || |||||||| |
|
|
| T |
3921299 |
tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaat |
3921357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||| |||| ||||| || || || |||| |||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
6869201 |
taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt |
6869104 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagcaatgagtagttgacccccata |
203 |
Q |
| |
|
||||| | ||||| || || ||||||| |||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
6869103 |
tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata |
6869027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 4497222 - 4497377
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | | ||| | |
|
|
| T |
4497222 |
taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact |
4497321 |
T |
|
| Q |
127 |
tcaacaatgccaaatgcaagaggaaagtgctggtcatttgggtctctaccaacagc |
182 |
Q |
| |
|
||||||| ||||| || || ||||| | ||||||||| ||||| || |||||||| |
|
|
| T |
4497322 |
tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc |
4497377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 11318315 - 11318404
Alignment:
| Q |
160 |
tcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacat |
249 |
Q |
| |
|
|||||||||||||| |||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || ||||| || |||||| |
|
|
| T |
11318315 |
tcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccgataaaaggtctacat |
11318404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 18289 - 18202
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgcc |
114 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| |
|
|
| T |
18289 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgcc |
18202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 24676042 - 24676129
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgcc |
114 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| |
|
|
| T |
24676042 |
taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgcc |
24676129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
| Q |
27 |
taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt |
126 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||||| || || || |||| ||||||| ||||||||| ||||| ||| || ||||||||||| |
|
|
| T |
36915439 |
taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt |
36915340 |
T |
|
| Q |
127 |
tcaa |
130 |
Q |
| |
|
|||| |
|
|
| T |
36915339 |
tcaa |
36915336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 40061 - 40153
Alignment:
| Q |
156 |
ctggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctaca |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||| | || ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||||| |
|
|
| T |
40061 |
ctggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcctaca |
40153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0121 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 43583 - 43494
Alignment:
| Q |
160 |
tcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacat |
249 |
Q |
| |
|
||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || ||||| || |||||| |
|
|
| T |
43583 |
tcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccgataaaaggtctacat |
43494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 18131585 - 18131674
Alignment:
| Q |
160 |
tcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcctacat |
249 |
Q |
| |
|
||||||||| |||| ||||| ||||| || ||||| || ||||| | |||||||||||||| |||||||| || ||||| || |||||| |
|
|
| T |
18131585 |
tcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccgataaaaggtctacat |
18131674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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