View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_35 (Length: 253)
Name: NF9960_1D_low_35
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_35 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 37139829 - 37139595
Alignment:
| Q |
19 |
acatcttatatggaaggaaatactggtcaccctgtatttgaaacagcatttggaaagattgccattaatatatgttatggtaggcaccatcctttaaatt |
118 |
Q |
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| T |
37139829 |
acatattatatggaaggaaatactggtcaccctgtatttgaaacagaatttggaaagattgccattaatatatgttatggtaggcaccatcctttaaatt |
37139730 |
T |
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| Q |
119 |
ggttagcttttggcttaaatggtgcggaaattgttttcaaccctgctgccaccgttggagaactcagtgaacctatgtggccaatagaggttcgttgttt |
218 |
Q |
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| T |
37139729 |
ggttagcttttggcttaaatggtgcggaaattgttttcaaccctgctgccaccgttggagaactcagtgaacctatgtggccaatagaggttcgttgttt |
37139630 |
T |
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| Q |
219 |
tatattggtggaagacatgttagactcctttctgc |
253 |
Q |
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| T |
37139629 |
tatattgatggaagacatgttagactcctttctgc |
37139595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 37135890 - 37135664
Alignment:
| Q |
19 |
acatcttatatggaaggaaatactggtcaccctgtatttgaaacagcatttggaaagattgccattaatatatgttatggtaggcaccatcctttaaatt |
118 |
Q |
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|||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
37135890 |
acatattatatggaaggaaatacaggtcacccagtatttgaaacagaatttggaaagattgccattaatatatgttatggtaggcaccatcctttgaact |
37135791 |
T |
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| Q |
119 |
ggttagcttttggcttaaatggtgcggaaattgttttcaaccctgctgccaccgttggagaactcagtgaacctatgtggccaatagaggttcgttgttt |
218 |
Q |
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| T |
37135790 |
gtttaacttttggcttgaatggcgccgaaattgttttcaacccttgtgccactgttggtggactcactgaagcaatgtggccaatagaggtcagttgttt |
37135691 |
T |
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| Q |
219 |
tatattggtggaagacatgttagactc |
245 |
Q |
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| T |
37135690 |
tatattgatggaagacatgttaaactc |
37135664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 12077331 - 12077107
Alignment:
| Q |
19 |
acatcttatatggaaggaaatactggtcaccctgtatttgaaacagcatttggaaagattgccattaatatatgttatggtaggcaccatcctttaaatt |
118 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| | |
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| T |
12077331 |
acatattatatggaaggaaatacaggtcaccctgtatttgaaacagaatttggaaagattgccattaatat--gttatggtagacaccatcctttaaact |
12077234 |
T |
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| Q |
119 |
ggttagcttttggcttaaatggtgcggaaattgttttcaaccctgctgccaccgttggagaactcagtgaacctatgtggccaatagaggttcgttgttt |
218 |
Q |
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| | | |||||||||| |||| | ||||||||| |||||||| |||||| ||||| ||||||| |||| | || |||||||||||||| ||||||| |
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| T |
12077233 |
gttaaacttttggcttgaatgacgacgaaattgttctcaacccttgtgccactgttggtgaactcactgaagcaatatggccaatagaggtcagttgttt |
12077134 |
T |
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| Q |
219 |
tatattggtggaagacatgttagactc |
245 |
Q |
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| T |
12077133 |
tatattgatggaagacatgttaaactc |
12077107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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