View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_37 (Length: 250)
Name: NF9960_1D_low_37
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 7952644 - 7952878
Alignment:
| Q |
1 |
aggtggtggattatttcacaaatcatgttgcttctctagtggttaataggccaaagttggatggagtcccttttccatctctcactgaggaggagaatga |
100 |
Q |
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| T |
7952644 |
aggtggtggattatttcacaaatcatgttgcttctccagtggttaataggccaaagttggatggagtcccttttccatctctcaccgaggaggataatga |
7952743 |
T |
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| Q |
101 |
gtttttgatcgctccattcactttgttggaaatagaggtcgtggttaaagagagtgatggggataaaagcccgggttcggatgggtacaattttgcgttt |
200 |
Q |
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| T |
7952744 |
gtttttgatcgctccattcactttgttggaaatagaggcggtggttaaagagagtgacggggataaaagcccgggtctggatgggtacaattttgcgttt |
7952843 |
T |
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| Q |
201 |
attaacgaattttggtacttgataaaagatgatgt |
235 |
Q |
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| T |
7952844 |
attaagaaattttggtacttgataaaagatgatgt |
7952878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 40388207 - 40388116
Alignment:
| Q |
141 |
gtggttaaagagagtgatggggataaaagcccgggttcggatgggtacaattttgcgtttattaacgaattttggtacttgataaaagatga |
232 |
Q |
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| T |
40388207 |
gtggttagagatagtgatggtaataaaagtccgtgtccggatggttttaatttcgcatttatcaaagaattttggtacttgataaaagatga |
40388116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 44162291 - 44162522
Alignment:
| Q |
2 |
ggtggtggattatttcacaaatcatgttgcttctctagtggttaataggccaaagttggatggagtcccttttccatctctcactgaggaggagaatgag |
101 |
Q |
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| T |
44162291 |
ggtggtggattatttcatgattcatgtttcttctcttttgtgtgataggccaaagttggatggggtaccgtttccatctctatccgaggatgagaatttg |
44162390 |
T |
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| Q |
102 |
tttttgatcgctccattcactttgttggaaatagaggtcgtggttaaagagagtgatggggataaaagcccgggttcggatgggtacaattttgcgttta |
201 |
Q |
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| T |
44162391 |
cgtttgattgctcctttttccttattggaaatagaggcggtggttaaagatagcgatggggataaaagcccgggaccggatggttttaattttgctttta |
44162490 |
T |
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| Q |
202 |
ttaacga-attttggtacttgataaaagatga |
232 |
Q |
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| T |
44162491 |
ttaaggattttttggtacttgattaaagatga |
44162522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 232
Target Start/End: Original strand, 49454567 - 49454673
Alignment:
| Q |
126 |
ttggaaatagaggtcgtggttaaagagagtgatggggataaaagcccgggttcggatgggtacaattttgcgtttattaacgaattttggtacttgataa |
225 |
Q |
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| T |
49454567 |
ttggaaatggaggcggtggtgagagatagtgatggtggtaaaagcccgggtccggatgcttttaattttgcttttattaaagaattttggtacttgataa |
49454666 |
T |
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| Q |
226 |
aagatga |
232 |
Q |
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| T |
49454667 |
aagatga |
49454673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 232
Target Start/End: Original strand, 40084773 - 40084864
Alignment:
| Q |
141 |
gtggttaaagagagtgatggggataaaagcccgggttcggatgggtacaattttgcgtttattaacgaattttggtacttgataaaagatga |
232 |
Q |
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| T |
40084773 |
gtggttagagagagtgatggtagtaagagcccgggtccggatggtttcaattttgcgtttgttaaggagttttggtatttgatcaaacatga |
40084864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 17776405 - 17776494
Alignment:
| Q |
128 |
ggaaatagaggtcgtggttaaagagagtgatggggataaaagcccgggttcggatgggtacaattttgcgtttattaacgaattttggta |
217 |
Q |
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| T |
17776405 |
ggaaatagagttggtggtgaaggagagtgatgggaataagagtccgggtccggatggttttaattttgcatttattaagcaattttggta |
17776494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 55351267 - 55351335
Alignment:
| Q |
147 |
aaagagagtgatggggataaaagcccgggttcggatgggtacaattttgcgtttattaacgaattttgg |
215 |
Q |
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| T |
55351267 |
aaagatagtgatggtaataaaagcccgggtccggatggatttaattttgcttttattaaagaattttgg |
55351335 |
T |
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