View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_38 (Length: 248)
Name: NF9960_1D_low_38
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_38 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 24693232 - 24693002
Alignment:
| Q |
18 |
gacatcagtgccgggttcaggtgatttttgcattgtaagtgattggtttgagtttgttataacaaaagttgatttatcaaagtcttgggaaaaagtaact |
117 |
Q |
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| T |
24693232 |
gacatcagtgccaggttcaggtgatttttgcattgtaagtgattggtttgagtttgttataacaaaagttgattgatcaaagtcttgtgaaaaagaaact |
24693133 |
T |
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| Q |
118 |
agttggctattgtaactggatggaattggagtaatccagtctgcaacagctttgttagtatcggctttgatgtcccaatttctggtggtgtgaccggcaa |
217 |
Q |
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| T |
24693132 |
agttggctattgtaactggatggaattggagtaatccagtctgcaacagctttgttagtatcggctttgatgtcccaatttctggtggtgtgaccggcaa |
24693033 |
T |
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| Q |
218 |
gaagatatggcccgtaaagaatagcttgaac |
248 |
Q |
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| T |
24693032 |
gaagatatggcccgtaaagaatagcttgaac |
24693002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 24732677 - 24732452
Alignment:
| Q |
22 |
tcagtgccgggttcaggtgatttttgcattgtaagtgattggtttgagtttgttataacaaaagttgatttatcaaagtcttgggaaaaagtaactagtt |
121 |
Q |
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| T |
24732677 |
tcagtgccaggtccgggtaatatttccatcgtaagtgattgttttgagtttgttataacaagagttgatttgttgatgtcttgtgaataagaaactagtt |
24732578 |
T |
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| Q |
122 |
ggctattgtaactggatggaattggagtaatccagtctgcaacagctttgttagtatcggctttgatgtcccaatttctggtggtgtgaccggcaagaag |
221 |
Q |
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| T |
24732577 |
gactactgtaattggatggaattggagtaatccagtctgcaacagctttgttagtaacgcctttaatgtcccaaatgctggtggtgtgaccggcgagaag |
24732478 |
T |
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| Q |
222 |
atatggcccgtaaagaatagcttgaa |
247 |
Q |
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| T |
24732477 |
atatggtccgtaaagaatggcttgaa |
24732452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 24723965 - 24723740
Alignment:
| Q |
22 |
tcagtgccgggttcaggtgatttttgcattgtaagtgattggtttgagtttgttataacaaaagttgatttatcaaagtcttgggaaaaagtaactagtt |
121 |
Q |
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| T |
24723965 |
tcagtgccaggtccgggtaatatttccatcgtaagtgattgttttgagttggttataacaagagttgatttgttgatgtcttgtgaataagaaactagtt |
24723866 |
T |
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| Q |
122 |
ggctattgtaactggatggaattggagtaatccagtctgcaacagctttgttagtatcggctttgatgtcccaatttctggtggtgtgaccggcaagaag |
221 |
Q |
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| T |
24723865 |
gactactgtaattggatggaattggagtaatccagtctgcaacagctttgttagtaacgcctttaatgtcccaaatgctggtggtgtgaccggcgagaag |
24723766 |
T |
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| Q |
222 |
atatggcccgtaaagaatagcttgaa |
247 |
Q |
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| T |
24723765 |
atatggtccgtaaagaatggcttgaa |
24723740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 24747847 - 24747723
Alignment:
| Q |
21 |
atcagtgccgggttcaggtgatttttgcattgtaagtgattggtttgagtttgttataacaaaagttgatttatcaaagtcttgggaaaaagtaactagt |
120 |
Q |
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| T |
24747847 |
atcagtgtctggttcaggtaatttttgctttgtaagtgattggtttgagtttgttataacaatagttgaatttttaaagccttgtgaaagcgaaactagt |
24747748 |
T |
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| Q |
121 |
tggctattgtaactggatggaattg |
145 |
Q |
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| T |
24747747 |
tgattatagtaactggaaggaattg |
24747723 |
T |
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