View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_42 (Length: 239)

Name: NF9960_1D_low_42
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_42
NF9960_1D_low_42
[»] chr5 (27 HSPs)
chr5 (1-217)||(38816723-38816932)
chr5 (9-82)||(19820430-19820503)
chr5 (15-82)||(22013364-22013431)
chr5 (9-82)||(42469171-42469244)
chr5 (9-57)||(15410484-15410532)
chr5 (9-60)||(6326333-6326384)
chr5 (8-67)||(15382442-15382501)
chr5 (10-43)||(6035472-6035505)
chr5 (15-82)||(2436878-2436939)
chr5 (16-60)||(21522722-21522766)
chr5 (16-60)||(21533288-21533332)
chr5 (9-60)||(21191092-21191143)
chr5 (9-43)||(3966492-3966526)
chr5 (9-43)||(17123037-17123071)
chr5 (9-67)||(21137654-21137712)
chr5 (13-43)||(27144452-27144482)
chr5 (8-82)||(30135264-30135337)
chr5 (14-60)||(36642803-36642849)
chr5 (9-50)||(5873549-5873590)
chr5 (9-82)||(6247572-6247645)
chr5 (10-43)||(11685928-11685961)
chr5 (9-50)||(14674251-14674292)
chr5 (9-50)||(19579683-19579724)
chr5 (9-38)||(27932229-27932258)
chr5 (9-50)||(34879332-34879373)
chr5 (15-84)||(37328886-37328955)
chr5 (9-41)||(28588710-28588742)
[»] chr7 (29 HSPs)
chr7 (9-82)||(27944991-27945064)
chr7 (9-82)||(24105629-24105701)
chr7 (9-60)||(11722134-11722185)
chr7 (11-82)||(2034392-2034462)
chr7 (9-67)||(1433419-1433477)
chr7 (9-87)||(7328727-7328805)
chr7 (9-43)||(32308109-32308143)
chr7 (9-67)||(43249958-43250016)
chr7 (9-58)||(2425769-2425818)
chr7 (9-82)||(43027505-43027578)
chr7 (9-58)||(49107795-49107844)
chr7 (9-49)||(8046063-8046103)
chr7 (9-57)||(19206025-19206073)
chr7 (9-49)||(23191879-23191919)
chr7 (9-69)||(24339605-24339665)
chr7 (7-67)||(26329416-26329476)
chr7 (9-57)||(26733279-26733327)
chr7 (9-43)||(20549780-20549814)
chr7 (9-43)||(22484014-22484048)
chr7 (9-39)||(28155563-28155593)
chr7 (9-39)||(29787405-29787435)
chr7 (9-46)||(2948669-2948706)
chr7 (9-58)||(4017830-4017879)
chr7 (9-58)||(5235960-5236009)
chr7 (10-43)||(6630949-6630982)
chr7 (9-50)||(21828441-21828482)
chr7 (10-43)||(25791642-25791675)
chr7 (9-81)||(598160-598231)
chr7 (9-49)||(20545272-20545312)
[»] chr6 (28 HSPs)
chr6 (12-67)||(9027143-9027198)
chr6 (9-82)||(853895-853968)
chr6 (14-82)||(8365560-8365628)
chr6 (9-80)||(12696277-12696347)
chr6 (9-67)||(5000662-5000720)
chr6 (9-82)||(6389693-6389766)
chr6 (9-58)||(9629357-9629406)
chr6 (9-82)||(30866180-30866253)
chr6 (14-82)||(3398569-3398637)
chr6 (9-57)||(9658854-9658902)
chr6 (12-60)||(10294079-10294127)
chr6 (9-45)||(19040339-19040375)
chr6 (9-56)||(13851712-13851759)
chr6 (9-67)||(5732546-5732604)
chr6 (9-67)||(7938081-7938139)
chr6 (9-67)||(7977866-7977924)
chr6 (9-67)||(9107406-9107464)
chr6 (9-67)||(16766662-16766720)
chr6 (9-50)||(20371146-20371187)
chr6 (9-60)||(426550-426601)
chr6 (9-48)||(7265629-7265668)
chr6 (9-59)||(8777009-8777059)
chr6 (9-67)||(34073383-34073441)
chr6 (9-67)||(34595099-34595157)
chr6 (9-50)||(17841625-17841666)
chr6 (9-82)||(25038107-25038180)
chr6 (9-82)||(4877890-4877965)
chr6 (9-81)||(31959111-31959182)
[»] chr8 (16 HSPs)
chr8 (14-82)||(25192388-25192456)
chr8 (14-82)||(126390-126457)
chr8 (9-73)||(926824-926888)
chr8 (9-65)||(29510340-29510396)
chr8 (9-60)||(22651948-22651999)
chr8 (9-60)||(27213519-27213570)
chr8 (9-82)||(13437000-13437073)
chr8 (12-69)||(24362241-24362298)
chr8 (9-50)||(31109554-31109595)
chr8 (9-40)||(39954315-39954346)
chr8 (9-47)||(31236613-31236651)
chr8 (9-82)||(4298922-4298994)
chr8 (9-82)||(11944615-11944688)
chr8 (9-69)||(4673461-4673521)
chr8 (9-41)||(27101506-27101538)
chr8 (9-49)||(34897068-34897108)
[»] chr2 (18 HSPs)
chr2 (18-82)||(33519736-33519800)
chr2 (9-82)||(20539710-20539783)
chr2 (9-82)||(21782854-21782927)
chr2 (8-82)||(19536433-19536507)
chr2 (10-83)||(23717976-23718048)
chr2 (10-83)||(24105648-24105720)
chr2 (9-57)||(21616737-21616785)
chr2 (16-81)||(21624217-21624282)
chr2 (8-83)||(14996259-14996333)
chr2 (9-67)||(4332891-4332949)
chr2 (9-67)||(18276486-18276544)
chr2 (9-83)||(21374735-21374810)
chr2 (9-42)||(37411280-37411313)
chr2 (9-69)||(4142876-4142936)
chr2 (9-45)||(18420470-18420506)
chr2 (9-49)||(21091706-21091746)
chr2 (9-65)||(31018557-31018613)
chr2 (9-57)||(36409663-36409711)
[»] scaffold0306 (1 HSPs)
scaffold0306 (9-83)||(13349-13423)
[»] scaffold0152 (1 HSPs)
scaffold0152 (9-83)||(21904-21978)
[»] chr1 (29 HSPs)
chr1 (9-59)||(6427323-6427373)
chr1 (9-67)||(40917716-40917774)
chr1 (9-66)||(398801-398858)
chr1 (9-59)||(2896157-2896207)
chr1 (9-83)||(5376536-5376609)
chr1 (9-82)||(5927376-5927449)
chr1 (9-74)||(10572625-10572690)
chr1 (14-69)||(48040503-48040558)
chr1 (9-51)||(12443496-12443538)
chr1 (9-43)||(17831567-17831601)
chr1 (9-43)||(36878450-36878484)
chr1 (9-82)||(39130803-39130876)
chr1 (9-57)||(9709795-9709843)
chr1 (9-57)||(34298411-34298459)
chr1 (9-60)||(1262856-1262907)
chr1 (9-60)||(1486745-1486796)
chr1 (9-43)||(609494-609528)
chr1 (9-43)||(3490426-3490460)
chr1 (9-43)||(19562657-19562691)
chr1 (9-67)||(38503285-38503343)
chr1 (9-59)||(48450623-48450673)
chr1 (9-50)||(6415037-6415078)
chr1 (9-82)||(31014993-31015066)
chr1 (9-50)||(46348419-46348460)
chr1 (9-41)||(10475013-10475045)
chr1 (9-73)||(15641066-15641130)
chr1 (14-50)||(18556497-18556533)
chr1 (22-82)||(34315663-34315722)
chr1 (9-37)||(41877506-41877534)
[»] scaffold0223 (1 HSPs)
scaffold0223 (9-82)||(20122-20195)
[»] chr3 (24 HSPs)
chr3 (9-82)||(8383207-8383280)
chr3 (16-82)||(8842280-8842346)
chr3 (9-67)||(24205077-24205135)
chr3 (14-73)||(10335327-10335386)
chr3 (9-67)||(4991003-4991061)
chr3 (9-51)||(5407283-5407325)
chr3 (9-67)||(28917966-28918024)
chr3 (9-69)||(5441067-5441128)
chr3 (9-58)||(9800014-9800063)
chr3 (9-82)||(55401025-55401098)
chr3 (9-81)||(8587057-8587129)
chr3 (9-81)||(32429416-32429488)
chr3 (11-50)||(21720746-21720785)
chr3 (9-59)||(2620089-2620139)
chr3 (9-83)||(14223889-14223962)
chr3 (9-67)||(15796330-15796388)
chr3 (9-59)||(26492241-26492291)
chr3 (9-50)||(3865592-3865633)
chr3 (9-46)||(8039871-8039908)
chr3 (9-50)||(12703989-12704030)
chr3 (9-82)||(25064859-25064932)
chr3 (14-50)||(10318075-10318111)
chr3 (9-57)||(12674537-12674585)
chr3 (9-81)||(14618732-14618804)
[»] scaffold0053 (1 HSPs)
scaffold0053 (9-67)||(8763-8821)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-67)||(225304-225362)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-49)||(92790-92830)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-67)||(241559-241611)
[»] scaffold0018 (2 HSPs)
scaffold0018 (9-79)||(178855-178925)
scaffold0018 (9-49)||(192285-192325)
[»] chr4 (15 HSPs)
chr4 (9-43)||(17345451-17345485)
chr4 (9-67)||(23293022-23293080)
chr4 (9-43)||(35723421-35723455)
chr4 (9-65)||(847918-847974)
chr4 (9-60)||(36635296-36635347)
chr4 (9-67)||(20633450-20633508)
chr4 (9-67)||(24343472-24343530)
chr4 (8-78)||(28084475-28084545)
chr4 (8-50)||(30298928-30298970)
chr4 (8-50)||(30327796-30327838)
chr4 (9-50)||(7012048-7012089)
chr4 (9-88)||(7670625-7670707)
chr4 (9-57)||(20521885-20521933)
chr4 (14-82)||(28720827-28720894)
chr4 (9-41)||(40613441-40613473)
[»] scaffold0652 (1 HSPs)
scaffold0652 (9-67)||(498-556)
[»] scaffold0475 (1 HSPs)
scaffold0475 (9-67)||(3281-3339)
[»] scaffold0103 (1 HSPs)
scaffold0103 (9-50)||(51793-51834)
[»] scaffold0168 (1 HSPs)
scaffold0168 (9-73)||(21002-21066)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 38816723 - 38816932
Alignment:
Q  1 tatagcgtttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatggttaccgttcaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||    
T  38816723 tatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccgttcaa 38816815  T
Q  101 ttattctattttctcaaattattgcttcaattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacct 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816816 ttattctattttctcaaattattgcttcaattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactatttttaacct 38816915  T
Q  201 gcagcgactctctgttg 217  Q
    |||||||||||||||||    
T  38816916 gcagcgactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 19820430 - 19820503
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  19820430 ttttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 22013431 - 22013364
Alignment:
Q  15 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 42469244 - 42469171
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||| | |||||||||||||| |||||||| ||||| ||| |||||| | ||||||||||||    
T  42469244 ttttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 15410484 - 15410532
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  15410484 ttttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 6326333 - 6326384
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    ||||||||||||| ||||| ||||||||||||||| |||||| |||||||||    
T  6326333 ttttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccgg 6326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 15382501 - 15382442
Alignment:
Q  8 tttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    ||||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  15382501 tttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15382442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 6035505 - 6035472
Alignment:
Q  10 tttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    ||||||||||||||||||||||||||||||||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagt 6035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 2436939 - 2436878
Alignment:
Q  15 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||||||||||||||      ||| ||||||||| |||||||| ||||||||||||    
T  2436939 caaattattagcggtgtcggcgtgtca------gtgtcgtgtccggtgtccgtatccgtgcttcatag 2436878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 21522766 - 21522722
Alignment:
Q  16 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 21533332 - 21533288
Alignment:
Q  16 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 21191092 - 21191143
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||| ||||||||||||| |||||||| ||||||| |||||| |||||||||    
T  21191092 ttttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccgg 21191143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 3966526 - 3966492
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    ||||||||||||||||||||||||||| |||||||    
T  3966526 ttttctcaaattattagcggtgtcggcatgtcagt 3966492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 17123071 - 17123037
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    ||||||||||||||||||||||| |||||||||||    
T  17123071 ttttctcaaattattagcggtgttggcgtgtcagt 17123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 21137712 - 21137654
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||| ||||||| || ||||||||||||||| ||||||  |||||||| ||||||    
T  21137712 ttttctcagattattaccgatgtcggcgtgtcagtgtccgtgttgtgtccggtgtccgt 21137654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 27144482 - 27144452
Alignment:
Q  13 ctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||||||||    
T  27144482 ctcaaattattagcggtgtcggcgtgtcagt 27144452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 30135337 - 30135264
Alignment:
Q  8 tttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||| ||||||||||||  ||||||||||||| ||||| ||| ||||||| | ||||||||  |||||||||||    
T  30135337 tttttttcaaattattagttgtgtcggcgtgtcggtatctgtgtcgtgtcc-gtgtccgtatatgtgcttcatag 30135264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 36642803 - 36642849
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  36642803 tcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 36642849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5873549 - 5873590
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||    
T  5873549 ttttctcaaattattagaggtgtcggcatgtcagtgtccgtg 5873590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 6247645 - 6247572
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||  |||||||||||||||| | |||  ||||||||| ||||| || |||| |||||||    
T  6247645 ttttttcaaattattagatgtgtcggcgtgtcagtgtgcgtatcgtgtccggtgtccgcatccgtgtttcatag 6247572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 11685961 - 11685928
Alignment:
Q  10 tttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||| |||||||    
T  11685961 tttctcaaattattagcggtgtcggcatgtcagt 11685928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 14674292 - 14674251
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  14674292 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 14674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 19579724 - 19579683
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||||||||||||||||| |||||||||| ||||| ||||||    
T  19579724 ttttctcaaattattagctgtgtcggcgtatcagtgtccgtg 19579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 27932258 - 27932229
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtg 38  Q
    ||||||||||||||||||||||||||||||    
T  27932258 ttttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34879373 - 34879332
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||||||||||| ||||||||| ||||||||| |||||||||    
T  34879373 ttttctcaaatttttagcggtgccggcgtgtccgtatccgtg 34879332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 37328886 - 37328955
Alignment:
Q  15 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagta 84  Q
    ||||||||| || ||||||| || ||||| |||||| ||||| ||| |||||| | ||||||||||||||    
T  37328886 caaattatttgctgtgtcggtgtatcagtgtccgtgtcgtgttcggtgtccgtgtccgtgcttcatagta 37328955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 28588710 - 28588742
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtca 41  Q
    |||||||||||||||| ||||||||||||||||    
T  28588710 ttttctcaaattattaccggtgtcggcgtgtca 28588742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 27945064 - 27944991
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||||||| ||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||    
T  27945064 ttttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 24105701 - 24105629
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||| |||||||||||||||| |||||| |||||||| | ||||||| ||||||||||||    
T  24105701 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 11722134 - 11722185
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||||||||||| |||||||||||||||||||||| |||||| |||||||||    
T  11722134 ttttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 2034462 - 2034392
Alignment:
Q  11 ttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||||| ||||||| ||||| |||||||||| |||||| | | ||||||| ||||||||||||    
T  2034462 ttctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagta-tccgtatccgtgcttcatag 2034392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 1433477 - 1433419
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||| |||||||||||||||| | |||||| ||||| ||| ||||||    
T  1433477 ttttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgt 1433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 7328727 - 7328805
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatat 87  Q
    |||||||||||||||||| || ||| ||||| | | || ||| ||||| ||| |||||||| |||||||||||||||||    
T  7328727 ttttctcaaattattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagtatat 7328805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 32308143 - 32308109
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  32308143 ttttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 43250016 - 43249958
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||| | |||||||||||||||| |||||| | ||||||| ||||||    
T  43250016 ttttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgt 43249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 2425769 - 2425818
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 58  Q
    |||||||||||||||| ||||| ||||||||||||||| ||| |||||||    
T  2425769 ttttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 43027505 - 43027578
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||| | |||| ||||||||| |||||| ||||||| | ||||| || ||||||||||||    
T  43027505 ttttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttcatag 43027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 49107844 - 49107795
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 58  Q
    |||||||||||||||||||||||||| |||||||  |||||| |||||||    
T  49107844 ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtgtcc 49107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 8046063 - 8046103
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 49  Q
    ||||||||||||||||| ||||| |||||||||||||||||    
T  8046063 ttttctcaaattattagtggtgttggcgtgtcagtatccgt 8046103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 19206073 - 19206025
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||||||||||||||||||||||||||||||  || |||||| ||||||    
T  19206073 ttttctcaaattattagcggtgtcggcgtgttggtgtccgtgtcgtgtc 19206025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 23191919 - 23191879
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 49  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  23191919 ttttctcaaattattagcggtgtcggcgtatcagtgtccgt 23191879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 24339665 - 24339605
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 69  Q
    |||| ||||||||||||| |||||||||||||| | ||| || ||||||||| ||||||||    
T  24339665 ttttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgtccggtgtccgtat 24339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 26329416 - 26329476
Alignment:
Q  7 gtttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||||| || ||||||||||||||| || ||| ||||||| | ||||||    
T  26329416 gtttttctcaaattattaacgatgtcggcgtgtcagtgtctgtgtcgtgtccagtgtccgt 26329476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 26733327 - 26733279
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||| |||||||||||||||||||| ||||||||| |||||| ||||||    
T  26733327 ttttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 20549814 - 20549780
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||| ||||||||    
T  20549814 ttttctcaaattattagcggtgtcggtgtgtcagt 20549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 22484048 - 22484014
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  22484048 ttttctaaaattattagcggtgtcggcgtgtcagt 22484014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 28155593 - 28155563
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgt 39  Q
    |||||||||||||||||||||||||||||||    
T  28155593 ttttctcaaattattagcggtgtcggcgtgt 28155563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 29787405 - 29787435
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgt 39  Q
    |||||||||||||||||||||||||||||||    
T  29787405 ttttctcaaattattagcggtgtcggcgtgt 29787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 2948706 - 2948669
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatc 46  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  2948706 ttttctaaaattatcagcggtgtcggcgtgtcagtatc 2948669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 4017830 - 4017879
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 58  Q
    |||||||||||||||| | ||||||||||||| || |||||| |||||||    
T  4017830 ttttctcaaattattatccgtgtcggcgtgtcggtgtccgtgtcgtgtcc 4017879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 5236009 - 5235960
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 58  Q
    |||||| |||||||||||||||||| ||||||||| || ||| |||||||    
T  5236009 ttttcttaaattattagcggtgtcgacgtgtcagtgtctgtgtcgtgtcc 5235960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 6630949 - 6630982
Alignment:
Q  10 tttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||| |||||||||||||||||    
T  6630949 tttctcaaattattagtggtgtcggcgtgtcagt 6630982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 21828441 - 21828482
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||||||||||| || |||||||||||||||||| ||||||    
T  21828441 ttttctcaaattactaacggtgtcggcgtgtcagtgtccgtg 21828482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 25791675 - 25791642
Alignment:
Q  10 tttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||| |||||||||||||||||||||||    
T  25791675 tttctcaaataattagcggtgtcggcgtgtcagt 25791642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 598231 - 598160
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 81  Q
    |||||| ||||||||||||||||||  |||||||| |||||| | |||| || ||||||  ||||||||||||    
T  598231 ttttcttaaattattagcggtgtcgatgtgtcagtgtccgtgtcatgtctggtgtccgt-gtcgtgcttcata 598160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 20545272 - 20545312
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 49  Q
    |||| |||||||||||||||||| |||||||| ||||||||    
T  20545272 ttttttcaaattattagcggtgttggcgtgtccgtatccgt 20545312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 9027198 - 9027143
Alignment:
Q  12 tctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  9027198 tctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 853895 - 853968
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||  ||||||||||||||| ||||||| ||||||||| |||||||| |||| |||||||    
T  853895 ttttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 8365560 - 8365628
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||  |||||||||||||||| |||||| |||||| || |||||||| ||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 12696347 - 12696277
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcat 80  Q
    |||| ||||||||||||| |||||||||||||||| |||||| ||||||| | |||||||| ||||||||||    
T  12696347 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5000662 - 5000720
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    ||||||| ||||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  5000662 ttttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgt 5000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 6389766 - 6389693
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||| | |||||||||||| ||| |||||| ||||||||| ||| || | ||||||||||||    
T  6389766 ttttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttcatag 6389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 9629406 - 9629357
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 58  Q
    ||||||||||||||| ||||||||||||||||| |||||||| |||||||    
T  9629406 ttttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtcc 9629357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 30866180 - 30866253
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||||||||||||| || ||||| || || ||| | ||||||| |||||||||||| ||||||||    
T  30866180 ttttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgtattcgtacttcatag 30866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 3398637 - 3398569
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||| |||||||||||||||| |||||| ||||| ||  |||||||| | ||||||||||    
T  3398637 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 9658902 - 9658854
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||    
T  9658902 ttttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 10294127 - 10294079
Alignment:
Q  12 tctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  10294127 tctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgtccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 19040375 - 19040339
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtat 45  Q
    |||||||||||||||||||||||||||||||||||||    
T  19040375 ttttctcaaattattagcggtgtcggcgtgtcagtat 19040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Complemental strand, 13851759 - 13851712
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgt 56  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  13851759 ttttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5732546 - 5732604
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||| |||||||||||||||||| ||| || ||||||| | ||||||    
T  5732546 ttttctcaaattattaacggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgt 5732604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 7938139 - 7938081
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  7938139 ttttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 7977866 - 7977924
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| |||||||||||||||||||| || ||||||| | ||||||    
T  7977866 ttttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgt 7977924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 9107406 - 9107464
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| |||||||||||| ||| |||||| ||||||||| ||||||    
T  9107406 ttttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgtccggtgtccgt 9107464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 16766720 - 16766662
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| |||||||||||||||| ||| || ||||||||| ||||||    
T  16766720 ttttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 16766662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 20371146 - 20371187
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||||||||||||||||||||||||||||||| | ||||||    
T  20371146 ttttctcaaattattagcggtgtcggcgtgtcaatgtccgtg 20371187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 426550 - 426601
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||| ||||||||||| | |||||||||||||||| |||||| |||||||||    
T  426550 ttttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 426601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 7265629 - 7265668
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccg 48  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  7265629 ttttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 8777009 - 8777059
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 59  Q
    |||| ||||||||||||  |||||||||||||||| |||||| ||||||||    
T  8777009 ttttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 34073383 - 34073441
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    ||||||||||||||||||| ||| ||| ||||||| |||||| ||||||| | ||||||    
T  34073383 ttttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtccagtgtccgt 34073441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 34595157 - 34595099
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||    
T  34595157 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 17841625 - 17841666
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  17841625 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 17841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 25038107 - 25038180
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||| |||||||  |||||||||||| ||| ||| | |   |||||||| ||||||||||||    
T  25038107 ttttctcaaattattaacggtgtcaacgtgtcagtatctgtgtcgtattcaatgtccgtatccgtgcttcatag 25038180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 4877965 - 4877890
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg--gagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||| ||||||| |||||| |||||||| ||||| ||  | ||||||||  |||||||||||    
T  4877965 ttttttcaaattattagctgtgtcggtgtgtcactatccgtgtcgtgttcggcgtgtccgtatctgtgcttcatag 4877890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 31959182 - 31959111
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 81  Q
    |||| ||||||||||||| ||| |||||||||||| | |||| | ||||| | |||||||| |||||||||||    
T  31959182 ttttttcaaattattagctgtgacggcgtgtcagtgttcgtgtcatgtcc-gtgtccgtatccgtgcttcata 31959111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 25192388 - 25192456
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||| |||||||||||||||| |||||  ||||||||  |||||||||||||||||||||    
T  25192388 tcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 126390 - 126457
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||||| |||||||||||||||||  ||||||| | || ||||| ||||||||||||    
T  126390 tcaaattattagcggtgttggcgtgtcagtatccgtatcgtgtcc-gtgtgcgtatccgtgcttcatag 126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 926824 - 926888
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 73  Q
    |||||||||||||||||  |||| ||||||||||| |||||| ||||||||| |||||| |||||    
T  926824 ttttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 29510340 - 29510396
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 65  Q
    |||| ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||    
T  29510340 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 22651999 - 22651948
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||| ||||||||||||| |||||||||||||||| |||||| |||||||||    
T  22651999 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 27213570 - 27213519
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  27213570 ttttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 13437000 - 13437073
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||| |||||||||||||||| ||| || | ||||||| |||| | | ||||||||||||    
T  13437000 ttttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttcatag 13437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 24362241 - 24362298
Alignment:
Q  12 tctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 69  Q
    ||||||||||||||||||||||||||||| || || ||| ||| ||||| ||||||||    
T  24362241 tctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtat 24362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 31109554 - 31109595
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  31109554 ttttctcaaattattaacggtgtcggcgtgtcagtgtccgtg 31109595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 39954315 - 39954346
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtc 40  Q
    ||||||||||||||||||||||||||||||||    
T  39954315 ttttctcaaattattagcggtgtcggcgtgtc 39954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 31236613 - 31236651
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatcc 47  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  31236613 ttttctcaaattattagcagtgtcggcgtgtccgtatcc 31236651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 4298922 - 4298994
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||| | |||||||||||| |||||| ||| ||||||| | |||| ||| ||||||||||||    
T  4298922 ttttttcaaattattaactgtgtcggcgtgttagtatctgtgtcgtgtcc-gtgtccatatccgtgcttcatag 4298994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 11944688 - 11944615
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||| | |||||||||||| || ||||||| |||||  || ||||||||  |||||||||||    
T  11944688 ttttatcaaattattaacagtgtcggcgtgttagcatccgtgtcgtgtttggtgtccgtatctgtgcttcatag 11944615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 4673461 - 4673521
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 69  Q
    |||| ||||||||||| | |||||||||||||||| || ||| ||||||||  ||||||||    
T  4673461 ttttttcaaattattatctgtgtcggcgtgtcagtgtctgtgtcgtgtccgatgtccgtat 4673521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 27101538 - 27101506
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtca 41  Q
    |||| ||||||||||||||||||||||||||||    
T  27101538 ttttttcaaattattagcggtgtcggcgtgtca 27101506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 34897108 - 34897068
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 49  Q
    ||||||||||||||||||||||||| |||||| || |||||    
T  34897108 ttttctcaaattattagcggtgtcgacgtgtctgtgtccgt 34897068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 33519800 - 33519736
Alignment:
Q  18 attattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| |||||||| ||||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 20539710 - 20539783
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||| |||||| ||||||||| |||||| ||||||| | |||||||| ||||||||||||    
T  20539710 ttttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 21782854 - 21782927
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||||| |||||||||||||||| |  ||| ||||||| | ||| |||||||||||||||||    
T  21782854 ttttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtattcgtgcttcatag 21782927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 19536433 - 19536507
Alignment:
Q  8 tttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||| ||||||||||||  |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  19536433 tttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 23718048 - 23717976
Alignment:
Q  10 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||| | ||| |||| |||||||||||||    
T  23718048 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 23717976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 24105720 - 24105648
Alignment:
Q  10 tttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    ||||||||||||||||||||||||| |||||||| |||||| | ||||| | ||| |||| |||||||||||||    
T  24105720 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 24105648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 21616785 - 21616737
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||||||||||||||||||||||||||||||| || |||||| ||||||    
T  21616785 ttttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 21624282 - 21624217
Alignment:
Q  16 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 81  Q
    ||||||||||| |||||||||||||||| || ||| ||||| ||| |||||||| || ||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 14996259 - 14996333
Alignment:
Q  8 tttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    ||||| ||||||||||||| |||||||| ||||||| |||||| | ||| | | |||||||| |||||||||||||    
T  14996259 tttttttcaaattattagctgtgtcggcttgtcagtgtccgtgtcatgt-ctgcgtccgtatccgtgcttcatagt 14996333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 4332949 - 4332891
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    ||||| |||||||||| | |||||||| ||| |||||| ||||||||||||| ||||||    
T  4332949 ttttcccaaattattatcagtgtcggcatgtaagtatctgtgccgtgtccggtgtccgt 4332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 18276544 - 18276486
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    ||||||||||||||||||||||||||| | ||||| || ||  ||||||||| ||||||    
T  18276544 ttttctcaaattattagcggtgtcggcatatcagtgtctgtatcgtgtccggtgtccgt 18276486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 21374735 - 21374810
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg--ccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    |||| ||||||||||||| |||||||||||| ||| ||||||  | |||||| | |||||||| |||||||||||||    
T  21374735 ttttttcaaattattagctgtgtcggcgtgttagtgtccgtgtccggtgtcc-gtgtccgtatccgtgcttcatagt 21374810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 37411280 - 37411313
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcag 42  Q
    ||||||||||||||||||||||||||| ||||||    
T  37411280 ttttctcaaattattagcggtgtcggcatgtcag 37411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 4142876 - 4142936
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 69  Q
    |||||| ||||| |||| ||||||||||||||||| |||| | ||||| ||| ||||||||    
T  4142876 ttttcttaaattgttagtggtgtcggcgtgtcagtgtccgggtcgtgttcggtgtccgtat 4142936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 18420470 - 18420506
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtat 45  Q
    |||||||||||||||||| |||| |||||||||||||    
T  18420470 ttttctcaaattattagcagtgttggcgtgtcagtat 18420506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 21091746 - 21091706
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 49  Q
    |||||| ||||||||||||||||||| |||||||| |||||    
T  21091746 ttttcttaaattattagcggtgtcggtgtgtcagtgtccgt 21091706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 31018613 - 31018557
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 65  Q
    |||||| |||||||||||||||| ||||||||||| ||| || ||| ||||| ||||    
T  31018613 ttttctgaaattattagcggtgttggcgtgtcagtgtccatgtcgtatccggtgtcc 31018557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 36409663 - 36409711
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||| ||||||||| |||||||||||| ||| |||||||||| ||||||    
T  36409663 ttttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtc 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 13423 - 13349
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    |||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  13423 ttttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 21904 - 21978
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    |||||||||||||||||  |||||||||||||||| |||||| | | ||||| |||||||| |||||||||||||    
T  21904 ttttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 6427373 - 6427323
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 59  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  6427373 ttttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 40917774 - 40917716
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||    
T  40917774 ttttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 398801 - 398858
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccg 66  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  398801 ttttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 2896157 - 2896207
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 59  Q
    ||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  2896157 ttttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccg 2896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 5376536 - 5376609
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    |||||| |||||||||||||||||||||||| ||| |||||| |||||||||| || |||| ||||| |||||||    
T  5376536 ttttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga-tctgtatacgtgcctcatagt 5376609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 5927376 - 5927449
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||| ||||  |||||||||| |||||| ||||||||| |||||||| ||||||| ||||    
T  5927376 ttttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 10572625 - 10572690
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtg 74  Q
    ||||||||||||||||| ||||||||||||||||| | | || ||||||||| |||||||| ||||    
T  10572625 ttttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 48040503 - 48040558
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtat 69  Q
    ||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 12443496 - 12443538
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 51  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
T  12443496 ttttctcaaattattagctgtgtcggcgtgtccgtatccgtgc 12443538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 17831567 - 17831601
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  17831567 ttttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 36878484 - 36878450
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  36878484 ttttctcaaattattagcggtgtcggcgtgtcagt 36878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 39130803 - 39130876
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||| |||||||||   ||||| |||||||| ||||| || ||||||||| |||||||| ||||||||||||    
T  39130803 ttttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 9709843 - 9709795
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    ||||||||||||||||||||||| ||| ||||||| |||||| ||||||    
T  9709843 ttttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtc 9709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 34298459 - 34298411
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    ||||||||||||||||| |||||||| |||||||| |||||| ||||||    
T  34298459 ttttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtc 34298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 1262907 - 1262856
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||||||||||||||||| ||||||||||||| || | |||| |||||||||    
T  1262907 ttttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccgg 1262856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 1486745 - 1486796
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| ||| |||||    
T  1486745 ttttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccgg 1486796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 609494 - 609528
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    ||||||||||||||||| |||||||||||||||||    
T  609494 ttttctcaaattattagtggtgtcggcgtgtcagt 609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 3490426 - 3490460
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||| ||||||||||||||||    
T  3490426 ttttctcaaattattagcagtgtcggcgtgtcagt 3490460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 19562657 - 19562691
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||| ||||||||||||||||    
T  19562657 ttttctcaaattattagcagtgtcggcgtgtcagt 19562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 38503343 - 38503285
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||||||||||||| |||| ||| |||||| | ||||| | ||||||    
T  38503343 ttttctcaaattattagcggtgtcggtgtgttagtgtccgtgtcatgtcccgtgtccgt 38503285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 48450623 - 48450673
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 59  Q
    |||| ||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  48450623 ttttttcaaattattagctgtgttggcgtgtcagtgtccgtgtcgtgtccg 48450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 6415037 - 6415078
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||    
T  6415037 ttttctcaaataattagcgatgtcggcgtgtcagtgtccgtg 6415078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 31015066 - 31014993
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||||| |||| |||| ||||||  ||||| |||| |||| ||| || | ||||||||||||    
T  31015066 ttttctcaaattattagctgtgtaggcgcgtcagtgcccgtgtcgtgcccggtgtctgtgtccgtgcttcatag 31014993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 46348419 - 46348460
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  46348419 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 46348460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 10475013 - 10475045
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtca 41  Q
    ||||||||| |||||||||||||||||||||||    
T  10475013 ttttctcaagttattagcggtgtcggcgtgtca 10475045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 15641066 - 15641130
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 73  Q
    |||||| ||||||||||| |||||||| ||||||| |||||| | ||||||  |||||| |||||    
T  15641066 ttttcttaaattattagcagtgtcggcatgtcagtgtccgtgtcatgtccgatgtccgtgttcgt 15641130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 18556497 - 18556533
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  18556497 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 18556533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 34315722 - 34315663
Alignment:
Q  22 ttagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||| |||||||| |||||||||||||| |||||||  | ||||||| ||||||||||||    
T  34315722 ttagctgtgtcggcatgtcagtatccgtgtcgtgtccata-tccgtatccgtgcttcatag 34315663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 41877506 - 41877534
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgt 37  Q
    |||||||||||||||||||||||||||||    
T  41877506 ttttctcaaattattagcggtgtcggcgt 41877534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 20195 - 20122
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||||  |||||||||||    
T  20195 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 8383280 - 8383207
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||| | |||||| | |||||| |||||    
T  8383280 ttttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtgctacatag 8383207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 8842346 - 8842280
Alignment:
Q  16 aaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||||| |||||||| ||||||||||||    
T  8842346 aaattattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttcatag 8842280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 24205077 - 24205135
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  24205077 ttttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 10335327 - 10335386
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 73  Q
    ||||||||||||  |||||||||||||||| |||||| ||||||||| |||||| |||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 4991003 - 4991061
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||| ||||||||||||||| |||||||| |||||| ||||| ||| ||||||    
T  4991003 ttttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgt 4991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 5407283 - 5407325
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgc 51  Q
    |||||||||||| ||||||||||||||||||| ||||||||||    
T  5407283 ttttctcaaatttttagcggtgtcggcgtgtcggtatccgtgc 5407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 28918024 - 28917966
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| |||||||||||||  ||||||||||||||| |||||| ||||||||| ||||||    
T  28918024 ttttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgt 28917966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5441067 - 5441128
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgga-gtccgtat 69  Q
    |||||||||||| ||||||||| |||||||||||| || ||| |||||||||| ||||||||    
T  5441067 ttttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccggatgtccgtat 5441128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 9800063 - 9800014
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtcc 58  Q
    ||||||||||||||||| ||||||||||||||||| | |||| |||||||    
T  9800063 ttttctcaaattattagaggtgtcggcgtgtcagtgtacgtgtcgtgtcc 9800014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 55401098 - 55401025
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| ||||||||||||  |||||||||| ||||| |||||| ||| ||||| ||||||||  |||||||||||    
T  55401098 ttttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 8587057 - 8587129
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 81  Q
    |||| |||||||| |||  |||||||||||||||| |||||| | ||||||| ||||||||  ||||||||||    
T  8587057 ttttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 32429416 - 32429488
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 81  Q
    |||||| |||||||||||| |||||| |||||| | | ||||  |||||||| |||||||| |||||||||||    
T  32429416 ttttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgtatacgtgcttcata 32429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Complemental strand, 21720785 - 21720746
Alignment:
Q  11 ttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  21720785 ttctcaaattattatcggtgtcggcgtgtcagtgtccgtg 21720746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 2620089 - 2620139
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 59  Q
    ||||||||||| ||||| ||||||||||||||||| |||| | ||||||||    
T  2620089 ttttctcaaatgattagtggtgtcggcgtgtcagtgtccgagtcgtgtccg 2620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 14223889 - 14223962
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 83  Q
    |||||||||||||||| | ||||||||||||| || || ||| ||||||| | ||| || |||||||||||||||    
T  14223889 ttttctcaaattattatctgtgtcggcgtgtcggtgtctgtgtcgtgtcc-gtgtctgtgttcgtgcttcatagt 14223962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 15796330 - 15796388
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||| | |||||||||||||| | |||||| ||||||||| ||||||    
T  15796330 ttttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 26492241 - 26492291
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccg 59  Q
    |||| |||||||||||||  ||||||||||||||| |||||| ||||||||    
T  26492241 ttttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 3865592 - 3865633
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  3865592 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 3865633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 8039871 - 8039908
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatc 46  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  8039871 ttttctcaaattattagcggtgttggcgtgtcaatatc 8039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 12704030 - 12703989
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||||||||||||||| ||||||||||||||  ||||||||    
T  12704030 ttttctcaaattattagtggtgtcggcgtgtccatatccgtg 12703989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 25064932 - 25064859
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    |||| |||||| ||||||||||||||||||||| | || ||| ||||||||| ||| |||  |||| |||||||    
T  25064932 ttttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtccggtgtctgtacccgtgtttcatag 25064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 10318075 - 10318111
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  10318075 tcaaattattagctgtgtcggcgtgtcagtgtccgtg 10318111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 12674537 - 12674585
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||||||||||||||||| ||||||| |||||| | |||||| ||||||    
T  12674537 ttttctcaaattattagcagtgtcggtgtgtcaatgtccgtgtcgtgtc 12674585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 14618804 - 14618732
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcata 81  Q
    |||||| |||||||||| |||||| |||| |||||  ||||| |||||| || |||||||  |||||||||||    
T  14618804 ttttcttaaattattaggggtgtcagcgtctcagtgcccgtgtcgtgtctggtgtccgtacccgtgcttcata 14618732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 8821 - 8763
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  8821 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 225304 - 225362
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||| | |||||||||||||||| |||||| ||||||||| ||||||    
T  225304 ttttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 92830 - 92790
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 49  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  92830 ttttctcaaattattagcggtgtcggcgtgtcagtgtccgt 92790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 241611 - 241559
Alignment:
Q  15 caaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||| |||||||||||||||| |||||| ||||||||| ||||||    
T  241611 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 241559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 178855 - 178925
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttca 79  Q
    |||| ||||||||||||  |||||||||||||||| |||||| ||||||||| |||  ||| |||||||||    
T  178855 ttttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcaatatccgtgcttca 178925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 192285 - 192325
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgt 49  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  192285 ttttctcaaattattaacggtgtcggcgtgtcagtgtccgt 192325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 17345451 - 17345485
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagt 17345485  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 23293022 - 23293080
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| |||||||||||||| | |||||| ||||||||| ||||||    
T  23293022 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 23293080  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 35723421 - 35723455
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagt 43  Q
    |||||||||||||||||||||||||||||||||||    
T  35723421 ttttctcaaattattagcggtgtcggcgtgtcagt 35723455  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 847974 - 847918
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtcc 65  Q
    ||||||||||||||||||||  ||||||||||||| || ||| ||||||||| ||||    
T  847974 ttttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtcc 847918  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 36635347 - 36635296
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccgg 60  Q
    ||||||||||||||||| ||||| ||||||||||| |||| | |||||||||    
T  36635347 ttttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccgg 36635296  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 20633508 - 20633450
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| |||||||||||||||||||| ||||||||| |||||  |||||| || ||||||    
T  20633508 ttttttcaaattattagcggtgtcgacgtgtcagtgtccgtatcgtgtctggtgtccgt 20633450  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 24343530 - 24343472
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||||||||||||| | ||||||||||||| |  |||||| ||||||||| ||||||    
T  24343530 ttttctcaaattattatccgtgtcggcgtgtcggcgtccgtgtcgtgtccggtgtccgt 24343472  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 28084545 - 28084475
Alignment:
Q  8 tttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttc 78  Q
    ||||| ||||||| ||||| |||||||||||||||  || ||| ||||||||| ||||||||  |||||||    
T  28084545 tttttttcaaattcttagctgtgtcggcgtgtcagcgtctgtgtcgtgtccggtgtccgtatctgtgcttc 28084475  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 30298970 - 30298928
Alignment:
Q  8 tttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||    
T  30298970 tttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 30298928  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 30327838 - 30327796
Alignment:
Q  8 tttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||    
T  30327838 tttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 30327796  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 7012089 - 7012048
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||||||||||||||| ||||||||||||||| || ||||||    
T  7012089 ttttctcaaattattatcggtgtcggcgtgtcggtgtccgtg 7012048  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 7670707 - 7670625
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcg---tgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatg 88  Q
    |||||||||| |||||||  ||||||||   ||||||| |||| | |||||||||  ||| ||||||||||||||| ||||||    
T  7670707 ttttctcaaactattagcaatgtcggcgacgtgtcagtttccgcgtcgtgtccggtatccatattcgtgcttcatactatatg 7670625  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 20521885 - 20521933
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtc 57  Q
    |||| ||||||||||| |||| ||||||||||||| |||||| ||||||    
T  20521885 ttttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtc 20521933  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 28720894 - 28720827
Alignment:
Q  14 tcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 82  Q
    ||||||||||||| |||||||| ||||||| | |||| ||||||| | ||| |||| ||||||||||||    
T  28720894 tcaaattattagctgtgtcggcatgtcagtgttcgtgtcgtgtcc-gtgtctgtatacgtgcttcatag 28720827  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 40613473 - 40613441
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtca 41  Q
    |||||||||| ||||||||||||||||||||||    
T  40613473 ttttctcaaaatattagcggtgtcggcgtgtca 40613441  T

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Target: scaffold0652 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 498 - 556
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||| ||||||||||||| |||||||||| ||||| |||||| ||||| ||| ||||||    
T  498 ttttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgt 556  T

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Target: scaffold0475 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 3339 - 3281
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgt 67  Q
    |||||| ||||| |||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  3339 ttttctaaaattgttagcattgtcgacgtgtcagtatccgtgtcgtgtccggtgtccgt 3281  T

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Target: scaffold0103 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 51834 - 51793
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtg 50  Q
    |||| ||||||||||||| |||||||||||||||| ||||||    
T  51834 ttttttcaaattattagctgtgtcggcgtgtcagtgtccgtg 51793  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 21066 - 21002
Alignment:
Q  9 ttttctcaaattattagcggtgtcggcgtgtcagtatccgtgccgtgtccggagtccgtattcgt 73  Q
    |||||||||||||||| | ||||| || ||||||| |||||| |||||| || |||||| |||||    
T  21066 ttttctcaaattattaaccgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgt 21002  T

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