View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_43 (Length: 238)

Name: NF9960_1D_low_43
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_43
NF9960_1D_low_43
[»] chr4 (13 HSPs)
chr4 (17-223)||(3955901-3956107)
chr4 (17-222)||(4024737-4024942)
chr4 (17-232)||(3920148-3920363)
chr4 (17-232)||(3801091-3801306)
chr4 (17-223)||(4009501-4009707)
chr4 (17-193)||(3986500-3986676)
chr4 (17-223)||(3933381-3933587)
chr4 (17-223)||(3817101-3817307)
chr4 (17-209)||(3809518-3809710)
chr4 (17-223)||(4001809-4002015)
chr4 (37-223)||(4018242-4018428)
chr4 (10-223)||(3963680-3963894)
chr4 (17-224)||(4218145-4218355)
[»] chr5 (1 HSPs)
chr5 (17-209)||(13397452-13397644)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 3956107 - 3955901
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  3956107 aaaaatacttttgctctaaacgatcaagatcatcataactgagcctcattacatcttgaaattttttatttggcagtcttttaagtttgtccagctgact 3956008  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    ||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3956007 ttcccattcttccttgtcttttccacgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatcaccttctttgaaagctca 3955908  T
Q  217 tagtact 223  Q
    |||||||    
T  3955907 tagtact 3955901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 4024737 - 4024942
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  4024737 aaaaatactttttctctaaacgatcaagatcatcataacttagtctcattacatcatgaactttttgaactggcagtcttttaagtttgtctagctgact 4024836  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    ||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  4024837 ttcccatacttctttattttttccacgaagcatatgagccaaaactttaagaactaatggaattcctttggcataatcgatcaccttctttgatagctca 4024936  T
Q  217 tagtac 222  Q
     |||||    
T  4024937 aagtac 4024942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 3920363 - 3920148
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  3920363 aaaaatactttttctctaaacgatcaagatcatcataactgagtttcactacatcatgaactttttgaactggcagtcttttaagtttgtctagctgact 3920264  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||| ||||||    
T  3920263 ttcccatacttctttgttttttccacgaagcatatgagccaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctca 3920164  T
Q  217 tagtacttcatatcag 232  Q
    ||||||| ||| ||||    
T  3920163 tagtactccatttcag 3920148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 3801091 - 3801306
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||    
T  3801091 aaaaatactttttctctaaatgatcaagatcatcataactgagtctcattacatcatgaacttcttgaattggcagtcttttaagtttgtctagcagact 3801190  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    |||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| || ||||||| ||||||    
T  3801191 ttcccatacttctttacattttccacgaagcatatgagccaaaactttaagaactaatggaactcctttggcatattcgatcaccctctttgatagctca 3801290  T
Q  217 tagtacttcatatcag 232  Q
    ||||||| ||| ||||    
T  3801291 tagtactccatttcag 3801306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 4009501 - 4009707
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||    
T  4009501 aaaaatacttttgctctaaacgatcaagatcatcataactgagcctcattacatcttgaatttttttattcggcagtcttttaagtttgtccagctgact 4009600  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    ||||||| |||| |||| ||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||||| || |||    
T  4009601 ttcccattcttccttgtcttttccacgaagtagatgagccaaaacttcaagaactaatggaattcctttggcataatcgaccactttctttgatagatca 4009700  T
Q  217 tagtact 223  Q
    |||||||    
T  4009701 tagtact 4009707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 3986500 - 3986676
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||||| ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  3986500 aaaaatactttttctctaaacgatcaagatcatcgtaactgagtttcactacatcatgaacttttttaactggcagtcttttaagtttgtctagctgact 3986599  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataat 193  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  3986600 ttcccatacttctttgttttttccacgaagcatatgagccaaaactttaagaactaatggatttcctttggcataat 3986676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 3933587 - 3933381
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||  |||||||||||||||||||||||| |||| |||    
T  3933587 aaaaatacttttgctctaaacgatcaagatcatcataactaagcctcattacatcatgaacttttggaattggcagtcttttaagtttgtctagcttact 3933488  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    |||||||||||||||   ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| || ||| ||| ||||||    
T  3933487 ttcccatacttctttacattttccacgaagcatatgagccaaaactttaagaactaatggaactcctttggcatattcgatcaccctctctgatagctca 3933388  T
Q  217 tagtact 223  Q
    |||||||    
T  3933387 tagtact 3933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 3817101 - 3817307
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||||| |||||||||| ||||||||    
T  3817101 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattgcatcataaactttttgaactggcagtcttctaagtttgtctagctgact 3817200  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    ||||||||||||||| ||||||||| |||||| |||||| ||||| ||||||||||| ||||| ||||||||||||| || | |  ||||||| ||||||    
T  3817201 ttcccatacttctttcttttttccacgaagcatatgagctaaaaccttaagaactaacggaatccctttggcataattgaccacactctttgatagctca 3817300  T
Q  217 tagtact 223  Q
    |||||||    
T  3817301 tagtact 3817307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 3809518 - 3809710
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||| | || ||||| || || |||||||||| |||||||||| ||||||||    
T  3809518 aaaaatacttcttctctaaaggatcaagatcatcataactgagtctcattactttatcaacttcttgaactggcagtcttctaagtttgtctagctgact 3809617  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttga 209  Q
    ||||||||||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||| || || |||||||    
T  3809618 ttcccatacttctttattttttccacgaagcatattagccaaaactttaagaactaatggaattcctttggcatattcggtcaccctctttga 3809710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 4001809 - 4002015
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| |||||||||| || ||||||||    
T  4001809 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcataaacttttttacttggaagttttttaagtttatcaagctgact 4001908  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctca 216  Q
    |||||||||||| ||   ||||||| |||| | ||||||||||||||||| | |||||||||||||||| |||||  | | | || ||||||| ||||||    
T  4001909 ttcccatacttccttaacttttccacgaagtaaatgagccaaaactttaacacctaatggaattccttttgcatacgcaaccaccctctttgatagctca 4002008  T
Q  217 tagtact 223  Q
    |||||||    
T  4002009 tagtact 4002015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 4018242 - 4018428
Alignment:
Q  37 cgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgactttcccatacttctttgtttt 136  Q
    ||||| |||||||||||||| | |||| ||||||| |||||||||||| |||||| | ||||||| ||||| || |||||||||||||||   || | ||    
T  4018242 cgatccagatcatcataactcaatctcgttacatcttgaacttttttacttggcatttttttaagcttgtctagttgactttcccatactagcttatctt 4018341  T
Q  137 ttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagctcatagtact 223  Q
    ||||  |||| |||||||||||||||||||||||||||||||| ||||||||||||| || | || ||||||  |||||||||||||    
T  4018342 ttccgcgaagaagatgagccaaaactttaagaactaatggaatgcctttggcataattgaccaccctctttgttagctcatagtact 4018428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 3963894 - 3963680
Alignment:
Q  10 aatatctaaaaata-cttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtcc 108  Q
    |||||||||||| | ||||||||||   ||||| |||||||||||||| | |||||||||||| |||||||||||| |||||| | || |||| |||||     
T  3963894 aatatctaaaaaaatcttttgctcttcgcgatctagatcatcataactcaatctcattacatcttgaacttttttacttggcatttttctaagcttgtct 3963795  T
Q  109 agctgactttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttg 208  Q
    || |||||||||||||||   || | ||||||  | |  ||||| |||||||||||||||||||||||||| |||||||||||||  | | || ||||||    
T  3963794 agttgactttcccatactagcttatcttttccgcggacaagatgcgccaaaactttaagaactaatggaatgcctttggcataattcaccaccctctttg 3963695  T
Q  209 aaagctcatagtact 223  Q
    | ||||||| |||||    
T  3963694 atagctcattgtact 3963680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 4218145 - 4218355
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||| | || || || || |||||||| | |||  ||||| || || |||      
T  4218145 aaaaatacttttgctctaagagatcaagatcatcataactgagtctcattactttatcaatttcttgaattggcactttttccagtttttctagttgata 4218244  T
Q  117 ttcccatacttctttgtt---ttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttgaaagc 213  Q
      ||||   ||  || ||   ||||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||     
T  4218245 aacccacgttttcttattatgttttccacgaaacatatgacccaaaactttaagaactaatggaattcctttggcataatcgaccaccttctttgataga 4218344  T
Q  214 tcatagtactt 224  Q
    || ||||||||    
T  4218345 tcgtagtactt 4218355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 13397452 - 13397644
Alignment:
Q  17 aaaaatacttttgctctaaacgatcaagatcatcataactgagtctcattacatcatgaacttttttaattggcagtcttttaagtttgtccagctgact 116  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  13397452 aaaaatacttctgctctaaacgatcaagatcatcaaaactgagtctcattacatcatgaactttttgaattggcagtcttttaagtttgtctagctgact 13397551  T
Q  117 ttcccatacttctttgttttttccatgaagcagatgagccaaaactttaagaactaatggaattcctttggcataatcgatccccttctttga 209  Q
    |||||||| |||||| || |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||    
T  13397552 ttcccatagttctttattctttccacgaagcatatgagccaaaactttaagaactaatgggattcctttggcataatcgaccaccctctttga 13397644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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