View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_1D_low_45 (Length: 233)
Name: NF9960_1D_low_45
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 50 - 204
Target Start/End: Complemental strand, 40993809 - 40993655
Alignment:
| Q |
50 |
tatatttttgcttttagatccacattattcaatcgagtcaactatacaattttgagaatcatatatactagaagttattggatttgatgatttagtagac |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40993809 |
tatatttttgcttttagatccacattattcaatcgagtcaactatgcaattttgagaatcatatatactagaagttattggatttgatgatttagtagac |
40993710 |
T |
|
| Q |
150 |
attatcatctttcactagctctaccaccattcattccactagctatgcaatttcc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
40993709 |
attatcatctttcactagctctaccaccattcattccactagctattcaatttcc |
40993655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 34900536 - 34900587
Alignment:
| Q |
13 |
atcaaagggatgtaaactccttaattgagaaatatcttatatttttgctttt |
64 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
34900536 |
atcaaagagatgtaaactccttaattgagaaatatcttatgtttttgttttt |
34900587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University