View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_1D_low_46 (Length: 233)
Name: NF9960_1D_low_46
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 3659355 - 3659583
Alignment:
| Q |
2 |
cacaattatctaaatgccaattaaagtggaacataacaaatccatttatgaatcatatgccaattagacacacagatgagatctaccaattaccaaacaa |
101 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659355 |
cacacttatctaaattccaattgaagtggaacataacaaatccatttat-aaccaaatgccaattagacacacagatgagatctaccaattaccaaacaa |
3659453 |
T |
|
| Q |
102 |
tctaagtccaatcaatttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaa |
201 |
Q |
| |
|
||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3659454 |
tctaagtccaatcaaattgtcctagaatccaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaatgacatttcacgtcaa |
3659553 |
T |
|
| Q |
202 |
aattttcacgcctttactcttcatatcagt |
231 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
3659554 |
aattttcacgcctttactcttcaaatcagt |
3659583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 3653106 - 3653317
Alignment:
| Q |
19 |
caattaaagtggaacataacaaatccatttat-gaatcatatgccaattagacacacagatgagatctaccaattaccaaacaatctaagtccaatcaat |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
3653106 |
caattgaagtggaacataacaaatccatttatagaaccaaatgccaattagacacgcagatgagatctaccagttaccaaacaatctaagtccagtcaaa |
3653205 |
T |
|
| Q |
118 |
ttctcctagaatacaatcaaacattacaaatcaaagggtagacaaagccttacatgaatataatgtaacgacatttcacgtcaaaattttcacgccttta |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3653206 |
ttctcctagaata--atcaaacattacaaatcaaagggtaaacaaaaccttacatgaatataatgtaacgacatttcacgtcaaaagtttcacgccttta |
3653303 |
T |
|
| Q |
218 |
ctcttcatatcagt |
231 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
3653304 |
ctcttcaaatcagt |
3653317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 3657199 - 3657245
Alignment:
| Q |
106 |
agtccaatcaatttctcctagaatacaatcaaacattacaaatcaaa |
152 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3657199 |
agtccaatcaagttctcctagaatacagtcaaacattacaaatcaaa |
3657245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University