View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9960_1D_low_50 (Length: 223)
Name: NF9960_1D_low_50
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 3e-93; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 30020299 - 30020499
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30020299 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttat |
30020398 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaggatgaca |
218 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30020399 |
taataactttgctactaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgaca |
30020498 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
30020499 |
a |
30020499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 30103344 - 30103144
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30103344 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttat |
30103245 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaggatgaca |
218 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30103244 |
taataactttgctactaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgaca |
30103145 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
30103144 |
a |
30103144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 30121573 - 30121373
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30121573 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttat |
30121474 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaggatgaca |
218 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30121473 |
taataactttgctactaaaagtgctgaatttactgttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaagatgaca |
30121374 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
30121373 |
a |
30121373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 30040396 - 30040196
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30040396 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggatgttatcatgggagttat |
30040297 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaggatgaca |
218 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
30040296 |
tactaactttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgaca |
30040197 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
30040196 |
a |
30040196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 30109874 - 30109674
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30109874 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggatgttatcatgggagttat |
30109775 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaggatgaca |
218 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30109774 |
tactaactttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgaca |
30109675 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
30109674 |
a |
30109674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 30234534 - 30234334
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30234534 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtggctagcaaaggggtgaccatggatgttatcatgggagttat |
30234435 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaaccttaccaggatgaca |
218 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30234434 |
tactaactttgctactaaaactgccgaatttacggttgaagctattggtcgtcaatttggttacatactttattacaagggcaaccttaccaggatgaca |
30234335 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
30234334 |
a |
30234334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 30078717 - 30078881
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30078717 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttat |
30078816 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttaca |
183 |
Q |
| |
|
|| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30078817 |
tattaactttgctactaagactgctgaatttacggttaaagctattggtcgtcaatttgattaca |
30078881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 183
Target Start/End: Complemental strand, 30136578 - 30136414
Alignment:
| Q |
19 |
gtaaattagaatctaacactctatttcaattgaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttctcatgggagttat |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30136578 |
gtaaattagaatctaactctctatttcaatagaaaaaattctataaactcaaattggtagctagcaaaggggtgaccatggatgttgtcatgggagttat |
30136479 |
T |
|
| Q |
119 |
taataacattgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttaca |
183 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
30136478 |
tattaactttgctactaaaactgctgaatttacggttgaagctattcgtcgtcaatttgattaca |
30136414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 30187349 - 30187270
Alignment:
| Q |
127 |
ttgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaacctt |
206 |
Q |
| |
|
||||| |||||| |||||| | || |||| | ||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
30187349 |
ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaaggacaacctt |
30187270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 30787720 - 30787766
Alignment:
| Q |
160 |
ctattggtcgtcaatttggttacatactctattacaagggcaacctt |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30787720 |
ctattggacgtcaatttggttacatactctactacaagggcaacctt |
30787766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 30168612 - 30168691
Alignment:
| Q |
127 |
ttgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaacctt |
206 |
Q |
| |
|
||||| |||||| |||||| | || |||| | ||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
30168612 |
ttgctgctaaaattgctgagtatatggttgtacctattggtcgtcaatttggttacatactctactacaagcgaaacctt |
30168691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 30009127 - 30009208
Alignment:
| Q |
126 |
attgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaacctta |
207 |
Q |
| |
|
|||||| |||||| ||||||| ||| |||| | ||||||| ||||||||| ||||||||||||| ||||||| | |||||| |
|
|
| T |
30009127 |
attgctgctaaaattgctgaaattatggttgcacctattggacgtcaatttcgttacatactctactacaaggactacctta |
30009208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 30276943 - 30277016
Alignment:
| Q |
133 |
ctaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaacctt |
206 |
Q |
| |
|
|||||| | |||||||||||||| | ||||||| | ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
30276943 |
ctaaaatttctgaatttacggttgcacctattggacaacaatttggttacataatatattacaagggcaacctt |
30277016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 30249370 - 30249416
Alignment:
| Q |
160 |
ctattggtcgtcaatttggttacatactctattacaagggcaacctt |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
30249370 |
ctattggacgtcaatttggttacatactctactacaagagaaacctt |
30249416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 30065624 - 30065705
Alignment:
| Q |
126 |
attgctactaaaactgctgaatttacggttaaagctattggtcgtcaatttggttacatactctattacaagggcaacctta |
207 |
Q |
| |
|
|||||| ||||| ||||||| ||| |||| | ||||||| ||||||||| ||||||||||||| ||||||| | |||||| |
|
|
| T |
30065624 |
attgctgctaaatttgctgaaattatggttgcacctattggacgtcaatttcgttacatactctactacaaggactacctta |
30065705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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