View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_52 (Length: 212)

Name: NF9960_1D_low_52
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_52
NF9960_1D_low_52
[»] chr4 (4 HSPs)
chr4 (13-200)||(49229250-49229434)
chr4 (14-64)||(21208659-21208709)
chr4 (14-67)||(21790108-21790161)
chr4 (25-62)||(43616241-43616278)
[»] chr7 (6 HSPs)
chr7 (14-62)||(47708408-47708456)
chr7 (13-61)||(47712487-47712535)
chr7 (14-64)||(47534975-47535025)
chr7 (14-62)||(3967712-3967760)
chr7 (23-64)||(3967799-3967840)
chr7 (34-63)||(44182528-44182557)
[»] chr1 (2 HSPs)
chr1 (14-62)||(748734-748782)
chr1 (14-62)||(15057664-15057712)
[»] chr3 (2 HSPs)
chr3 (23-64)||(36270083-36270124)
chr3 (25-64)||(50603609-50603648)
[»] chr6 (2 HSPs)
chr6 (25-64)||(3203676-3203715)
chr6 (23-56)||(3846444-3846477)
[»] chr5 (1 HSPs)
chr5 (25-64)||(7613363-7613402)
[»] chr8 (3 HSPs)
chr8 (25-63)||(17871859-17871897)
chr8 (23-56)||(27988092-27988125)
chr8 (23-56)||(28045394-28045427)
[»] chr2 (1 HSPs)
chr2 (14-64)||(44587728-44587778)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 49229250 - 49229434
Alignment:
Q  13 tatcactcactcaatgaacttaaaaaattgttttttgcttataatagtgacccgacgaggaagtatgtcctatctttcaaacgtactactagtatatgat 112  Q
    ||||| ||| ||||| ||| ||||||||| |||||| |||||| |||||||||||   ||||||||||||||||||||| |||||| | |||||||||||    
T  49229250 tatcattcattcaataaacctaaaaaattattttttacttatagtagtgacccga---ggaagtatgtcctatctttcatacgtacgattagtatatgat 49229346  T
Q  113 tttgacatgtcgtaccgtgtatggttctcccgtcacagttgaacgacataacgccattgagttgattaaatggtttatgtcttattca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  49229347 tttgacatgtcgtaccgtgtatggttctcccgtcacagttgaacgacataacgcaattgagttgattaaatggtttatgtcttattca 49229434  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 21208659 - 21208709
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    |||||| | ||||||||| ||||||||  ||||||||||||||||||||||    
T  21208659 atcacttattcaatgaacctaaaaaataattttttgcttataatagtgacc 21208709  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 21790161 - 21790108
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtgacccga 67  Q
    |||||||| ||||| ||||||||||| | |||||| ||||||||| ||||||||    
T  21790161 atcactcattcaataaacttaaaaaaatatttttttcttataataatgacccga 21790108  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 43616241 - 43616278
Alignment:
Q  25 aatgaacttaaaaaattgttttttgcttataatagtga 62  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  43616241 aatgaatttaaaaaattgatttttgcttataatagtga 43616278  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 47708456 - 47708408
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtga 62  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||||    
T  47708456 atcactcattcaatgaacttaaaaagtagttttttgcttataatagtga 47708408  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 47712535 - 47712487
Alignment:
Q  13 tatcactcactcaatgaacttaaaaaattgttttttgcttataatagtg 61  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  47712535 tatcactcattcaatgaacttcaaaaatagttttttgcttataatagtg 47712487  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 47535025 - 47534975
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    |||||||| | |||||||||||||| | |||||||||||||||||||||||    
T  47535025 atcactcatttaatgaacttaaaaagtagttttttgcttataatagtgacc 47534975  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 3967760 - 3967712
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtga 62  Q
    |||||||| ||||||||| |||||| | |||||||||||||||||||||    
T  3967760 atcactcattcaatgaacctaaaaagtagttttttgcttataatagtga 3967712  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 3967799 - 3967840
Alignment:
Q  23 tcaatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    ||||||||| |||||| | |||||||||||||||||||||||    
T  3967799 tcaatgaacctaaaaagtagttttttgcttataatagtgacc 3967840  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 44182557 - 44182528
Alignment:
Q  34 aaaaaattgttttttgcttataatagtgac 63  Q
    ||||||||||||||||||||||||||||||    
T  44182557 aaaaaattgttttttgcttataatagtgac 44182528  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 748734 - 748782
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtga 62  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||||    
T  748734 atcactcattcaatgaatctaaaaaattgttttttgcttataatagtga 748782  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 15057712 - 15057664
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtga 62  Q
    |||||||| ||||||||  |||||| | |||||||||||||||||||||    
T  15057712 atcactcattcaatgaatctaaaaagtagttttttgcttataatagtga 15057664  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 36270083 - 36270124
Alignment:
Q  23 tcaatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  36270083 tcaatgaacataaaaaatggttttttgcttataatagtgacc 36270124  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 50603609 - 50603648
Alignment:
Q  25 aatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  50603609 aatgaacttaaaaaatagatttttgcttataatagtgacc 50603648  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 3203715 - 3203676
Alignment:
Q  25 aatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  3203715 aatgaacctaaaaaattgatttttgcttataatagtgacc 3203676  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 3846477 - 3846444
Alignment:
Q  23 tcaatgaacttaaaaaattgttttttgcttataa 56  Q
    ||||||||||||||||||| ||||||||||||||    
T  3846477 tcaatgaacttaaaaaattattttttgcttataa 3846444  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 7613402 - 7613363
Alignment:
Q  25 aatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    |||||||||||||| ||| |||||||||||||||||||||    
T  7613402 aatgaacttaaaaagttgatttttgcttataatagtgacc 7613363  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 17871859 - 17871897
Alignment:
Q  25 aatgaacttaaaaaattgttttttgcttataatagtgac 63  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  17871859 aatgaacctaaaaaattgatttttgcttataatagtgac 17871897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 27988125 - 27988092
Alignment:
Q  23 tcaatgaacttaaaaaattgttttttgcttataa 56  Q
    |||||||||||||||| |||||||||||||||||    
T  27988125 tcaatgaacttaaaaagttgttttttgcttataa 27988092  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 28045427 - 28045394
Alignment:
Q  23 tcaatgaacttaaaaaattgttttttgcttataa 56  Q
    |||||||||||||||| |||||||||||||||||    
T  28045427 tcaatgaacttaaaaagttgttttttgcttataa 28045394  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 44587728 - 44587778
Alignment:
Q  14 atcactcactcaatgaacttaaaaaattgttttttgcttataatagtgacc 64  Q
    |||||||| ||||||||  |||||| | |||||||||||||||||||||||    
T  44587728 atcactcattcaatgaatctaaaaagtagttttttgcttataatagtgacc 44587778  T

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