View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_53 (Length: 211)

Name: NF9960_1D_low_53
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_53
NF9960_1D_low_53
[»] chr3 (2 HSPs)
chr3 (22-211)||(13219263-13219451)
chr3 (119-211)||(13217039-13217131)
[»] scaffold0002 (1 HSPs)
scaffold0002 (22-210)||(238258-238445)
[»] chr4 (1 HSPs)
chr4 (119-211)||(18176963-18177055)
[»] chr7 (1 HSPs)
chr7 (123-211)||(14541323-14541411)
[»] chr5 (1 HSPs)
chr5 (119-211)||(39047945-39048037)
[»] scaffold0380 (1 HSPs)
scaffold0380 (155-211)||(15667-15723)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 13219451 - 13219263
Alignment:
Q  22 agagcaaggcgtaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctannnnnnnggaggaatatgtgcttct 121  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||    
T  13219451 agagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacggcccaatctacccccc-ggaggaatatgtgcttct 13219353  T
Q  122 aaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaacaacaatgagaaaaagaattgcaatagctaaatgatga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  13219352 aaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 13219263  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 13217131 - 13217039
Alignment:
Q  119 tctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaacaacaatgagaaaaagaattgcaatagctaaatgatga 211  Q
    |||||||||||| ||||||  || |||||| |  | |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  13217131 tctaaaatatctcttataccatgaccaatagcccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatga 13217039  T

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Target: scaffold0002 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 238258 - 238445
Alignment:
Q  22 agagcaaggcgtaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctannnnnnnggaggaatatgtgcttct 121  Q
    |||||||| | ||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| |       |||||| |||| ||||||    
T  238258 agagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgacccccc-ggaggagtatgcgcttct 238356  T
Q  122 aaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaacaacaatgagaaaaagaattgcaatagctaaatgatg 210  Q
    |||| |||||| |||||||||||||| ||||||||||||| |||||| ||| |  |||||||||||| || ||||||||||||||||||    
T  238357 aaaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatgatg 238445  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Original strand, 18176963 - 18177055
Alignment:
Q  119 tctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaacaacaatgagaaaaagaattgcaatagctaaatgatga 211  Q
    |||||||||||| ||||||  || ||||||||  | |||||||||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatga 18177055  T

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Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  123 aaatatcttttatactgtgcccaataccgaagttagttctatacatatgaacaacaatgagaaaaagaattgcaatagctaaatgatga 211  Q
    |||||||||||||||  || |||||| |  |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 39048037 - 39047945
Alignment:
Q  119 tctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaacaacaatgagaaaaagaattgcaatagctaaatgatga 211  Q
    |||||||||||| ||||||  || |||||| |  | |||||||||||||||||| |   ||||||||||||||||||||||||||||||||||    
T  39048037 tctaaaatatctcttataccatgaccaatatcccaattagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatga 39047945  T

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Target: scaffold0380 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 15723 - 15667
Alignment:
Q  155 ttagttctatacatatgaacaacaatgagaaaaagaattgcaatagctaaatgatga 211  Q
    ||||||||||||||||||    ||||| ||||||||||||||||||||| |||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatga 15667  T

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