View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_55 (Length: 207)

Name: NF9960_1D_low_55
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_55
NF9960_1D_low_55
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-202)||(162873-163071)
[»] chr3 (9 HSPs)
chr3 (16-202)||(17738723-17738906)
chr3 (16-202)||(19040043-19040226)
chr3 (43-202)||(15262458-15262617)
chr3 (55-179)||(15012913-15013037)
chr3 (45-190)||(12843248-12843393)
chr3 (53-156)||(12508707-12508809)
chr3 (79-202)||(14578600-14578723)
chr3 (79-202)||(19727588-19727711)
chr3 (40-106)||(13028485-13028551)
[»] scaffold0046 (2 HSPs)
scaffold0046 (40-202)||(170-329)
scaffold0046 (119-202)||(12375-12458)
[»] chr1 (3 HSPs)
chr1 (1-194)||(20921674-20921864)
chr1 (79-202)||(16379318-16379441)
chr1 (52-110)||(20853745-20853803)
[»] scaffold0230 (1 HSPs)
scaffold0230 (40-197)||(18260-18417)
[»] chr6 (4 HSPs)
chr6 (40-197)||(18325938-18326095)
chr6 (40-197)||(18659997-18660154)
chr6 (79-200)||(23084910-23085031)
chr6 (79-188)||(18182473-18182582)
[»] scaffold0429 (1 HSPs)
scaffold0429 (40-197)||(1326-1483)
[»] scaffold0040 (1 HSPs)
scaffold0040 (79-194)||(18091-18206)
[»] scaffold0148 (1 HSPs)
scaffold0148 (78-179)||(2260-2361)
[»] scaffold0529 (1 HSPs)
scaffold0529 (60-202)||(5326-5468)
[»] scaffold0018 (2 HSPs)
scaffold0018 (79-194)||(9294-9409)
scaffold0018 (97-194)||(23259-23356)
[»] chr8 (3 HSPs)
chr8 (79-202)||(22523785-22523908)
chr8 (134-197)||(3274446-3274509)
chr8 (64-132)||(22710638-22710706)
[»] chr2 (3 HSPs)
chr2 (79-194)||(24817320-24817435)
chr2 (64-179)||(19647752-19647867)
chr2 (64-179)||(19817683-19817798)
[»] scaffold0035 (1 HSPs)
scaffold0035 (53-179)||(41025-41151)
[»] scaffold0017 (1 HSPs)
scaffold0017 (53-179)||(24567-24693)
[»] chr5 (5 HSPs)
chr5 (53-179)||(21410298-21410424)
chr5 (79-202)||(21631521-21631644)
chr5 (79-202)||(23474336-23474458)
chr5 (52-110)||(20824668-20824726)
chr5 (161-202)||(21332190-21332231)
[»] scaffold0001 (1 HSPs)
scaffold0001 (97-194)||(441898-441995)
[»] scaffold0331 (1 HSPs)
scaffold0331 (79-194)||(14922-15037)
[»] scaffold0042 (1 HSPs)
scaffold0042 (79-202)||(26590-26713)
[»] scaffold0100 (1 HSPs)
scaffold0100 (60-197)||(16533-16670)
[»] chr4 (1 HSPs)
chr4 (43-202)||(14162679-14162838)
[»] scaffold0270 (2 HSPs)
scaffold0270 (136-202)||(7111-7177)
scaffold0270 (136-202)||(14241-14307)
[»] scaffold0029 (1 HSPs)
scaffold0029 (52-110)||(93810-93868)
[»] scaffold0010 (1 HSPs)
scaffold0010 (52-110)||(180755-180813)
[»] scaffold0011 (1 HSPs)
scaffold0011 (79-194)||(23476-23591)
[»] chr7 (1 HSPs)
chr7 (79-202)||(15627722-15627845)
[»] scaffold0333 (1 HSPs)
scaffold0333 (79-132)||(18958-19011)
[»] scaffold0077 (1 HSPs)
scaffold0077 (79-200)||(57557-57678)
[»] scaffold0342 (1 HSPs)
scaffold0342 (99-202)||(14228-14332)


Alignment Details
Target: scaffold0007 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 162873 - 163071
Alignment:
Q  1 gataaggaggagtagaaagtgagtgatgagaagagatgtaagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaaga 100  Q
    |||||||||||| | |||||||||||||||||||||  |||||||||||||||||||| |||  |||||||||||| ||| |||||||||||||||||||    
T  162873 gataaggaggagcaaaaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaaattgtctgttaccgatgcggagagaagggtcacaaga 162972  T
Q  101 gtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattg 200  Q
    |||||||||||||   ||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  162973 gtaatgcttgtac---tgaggtgaagcggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattg 163069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 17738906 - 17738723
Alignment:
Q  16 aaagtgagtgatgagaagagatgtaagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccg 115  Q
    |||||||||||||||||||||  |||||||||||||||||||| |||  |||||||||||| ||| ||||||||||||||||||||||||||||||||      
T  17738906 aaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaaattgtctgttaccgatgcggagagaagggtcacaagagtaatgcttgtac-- 17738809  T
Q  116 gtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
     ||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  17738808 -tgaggtgaagcggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgca 17738723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 19040226 - 19040043
Alignment:
Q  16 aaagtgagtgatgagaagagatgtaagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccg 115  Q
    |||||||||||||||||||||  |||||||||||||||||||| |||  |||||||||||| ||| ||||||||||||||||||||||||||||||||      
T  19040226 aaagtgagtgatgagaagagacctaagaggaaagaggctcctactgaaattgtctgttaccgatgcggagagaagggtcacaagagtaatgcttgtac-- 19040129  T
Q  116 gtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
     ||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  19040128 -tgaggtgaagcggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatgttgtgtgtttcaattgca 19040043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 15262617 - 15262458
Alignment:
Q  43 aggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtg 142  Q
    |||||||| |||||| ||||| ||||||| ||    ||||| ||||| ||  | ||||||||||||||| | || |||||||| ||||||  ||||||||    
T  15262617 aggaaagatgctcctgttgagattgtctgctatacttgtggtgagaaaggctataagagtaatgcttgtcctggggatgtgaaacggtgtttccgttgtg 15262518  T
Q  143 gtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    |||  ||||| ||| |  |||| |||||||||||||| ||||||||||||||||||||||    
T  15262517 gtaagaaagggcatacacttgctgagtgtaagcatgatgatgttgtgtgtttcaattgca 15262458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 179
Target Start/End: Original strand, 15012913 - 15013037
Alignment:
Q  55 cctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggac 154  Q
    ||||||||  |||| ||||||| |||||||||||| ||||| ||||||||  ||||||  ||||||||||| | ||||   ||||||||||| || ||||    
T  15012913 cctattgaaattgtttgttaccgatgtggagagaaaggtcataagagtaacacttgtattggtgatgtgaaacagtgttttcgttgtggtaggaagggac 15013012  T
Q  155 attcgattgcagagtgtaagcatga 179  Q
    || | |||||||| || ||||||||    
T  15013013 atacaattgcagattgcaagcatga 15013037  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 12843248 - 12843393
Alignment:
Q  45 gaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggt 144  Q
    |||||| |||||| ||||| ||||||| ||    ||||| ||||| || |||||||||||||||||| | || |||||||| ||||||  ||||||||||    
T  12843248 gaaagatgctcctgttgagattgtctgctatacttgtggtgagaaaggccacaagagtaatgcttgtcctggagatgtgaaacggtgtttccgttgtggt 12843347  T
Q  145 agaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgt 190  Q
    |  ||||| ||| |  |||| ||||||||  |||| ||||||||||    
T  12843348 aagaaagggcatacacttgctgagtgtaaagatgatgatgttgtgt 12843393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 12508707 - 12508809
Alignment:
Q  53 ctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaagg 152  Q
    |||||| ||| ||||| ||||||| ||||||||| || ||||| |||||||| ||||||   || |||||||||||||||  ||||||||| || |||||    
T  12508707 ctcctactgaagttgtttgttaccgatgtggagaaaaaggtcataagagtaacgcttgtggtggcgatgtgaagcggtgt-tccgttgtggcaggaaagg 12508805  T
Q  153 acat 156  Q
    ||||    
T  12508806 acat 12508809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 14578600 - 14578723
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || |||||||||||||||||| | || ||||||||| |||||  |||||||||||  ||||| ||| |  |||| |||||||| ||||    
T  14578600 tgtggtgagaaaggccacaagagtaatgcttgtcctggggatgtgaagaggtgtttccgttgtggtaagaaaggtcatacacttgctgagtgtaaacatg 14578699  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    | ||| | || || ||||||||||    
T  14578700 atgatatagtatgcttcaattgca 14578723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 19727711 - 19727588
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || || |||||||| |||||| | || ||||| ||| |||||   ||||||||||  || |||||| |  |||| || ||||||||||    
T  19727711 tgtggtgagaaaggccataagagtaacgcttgtcctggggatgtaaagaggtgttttcgttgtggtaagaagggacatacacttgccgaatgtaagcatg 19727612  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    | |||||||| |||||||||||||    
T  19727611 atgatgttgtatgtttcaattgca 19727588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 13028485 - 13028551
Alignment:
Q  40 aagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatg 106  Q
    ||||||||||||  |||||  || ||||| ||||||| |||||||||||| || |||||||||||||    
T  13028485 aagaggaaagagaatcctaccgaagttgtttgttaccgatgtggagagaaaggccacaagagtaatg 13028551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 329 - 170
Alignment:
Q  40 aagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgtt 139  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||    
T  329 aagaggaaagaggctcctactgaagttgtctgttaccgatgtggagagaagggtcacaagagtaatgcttgtac---taatgtgaagcggtgtacccgtt 233  T
Q  140 gtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  232 gtggcagaaaaggacatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 12458 - 12375
Alignment:
Q  119 atgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12458 atgtgaagcggtgtacccgttgtggcagaaaaggacatacgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 12375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 20921864 - 20921674
Alignment:
Q  1 gataaggaggagtagaaagtgagtgatgagaagagatgtaagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaaga 100  Q
    |||||||| ||||||||||||| ||||||||   ||   ||||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||    
T  20921864 gataaggatgagtagaaagtgattgatgagagaggacccaagaggaaagaggctcctactgaagttgtctgttaccgatgcggagagaagggtcacaaga 20921765  T
Q  101 gtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgttt 194  Q
    ||||| |||||||   | | |||||| |||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  20921764 gtaattcttgtac---taacgtgaagtggtgtacccgttgtggcagaaaaggacatacgattacagagtgtaagcatgaagatattgtgtgttt 20921674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 16379441 - 16379318
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || ||||| ||||||| |||||| || ||||||||  |||||  |||||||||||  ||||||||| || || |||||||||||||||    
T  16379441 tgtggtgagaaaggccacaaaagtaatgtttgtactggagatgtgaaatggtgtttccgttgtggtaagaaaggacatacgcttccagagtgtaagcatg 16379342  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    | ||| ||||||||||||||||||    
T  16379341 atgatattgtgtgtttcaattgca 16379318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 20853745 - 20853803
Alignment:
Q  52 gctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttg 110  Q
    |||||| |||| ||||| |||||| ||||||| | |||||| |||||||||||||||||    
T  20853745 gctcctgttgatgttgtttgttacaaatgtggtgtgaagggccacaagagtaatgcttg 20853803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 18260 - 18417
Alignment:
Q  40 aagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgtt 139  Q
    ||||||||||||  ||| | ||| ||||| ||||||| |||||||||||| |||||||||| |||||||||||| ||| |||||||||||||| ||||||    
T  18260 aagaggaaagagattccaactgaagttgtttgttaccgatgtggagagaaaggtcacaagaataatgcttgtactggtaatgtgaagcggtgttcccgtt 18359  T
Q  140 gtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaa 197  Q
    ||||||||||||||||| | |||||||| || |||||||| ||||| |||||||||||    
T  18360 gtggtagaaaaggacatgcaattgcagattgcaagcatgatgatgtggtgtgtttcaa 18417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 18326095 - 18325938
Alignment:
Q  40 aagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgtt 139  Q
    ||||||||||||  ||| | ||| ||||| ||||||| |||||||||||| |||||||||| |||||||||||| ||| |||||||||||||| ||||||    
T  18326095 aagaggaaagagattccaactgaagttgtttgttaccgatgtggagagaaaggtcacaagaataatgcttgtactggtaatgtgaagcggtgttcccgtt 18325996  T
Q  140 gtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaa 197  Q
    ||||||||||||||||| | |||||||| || |||||||| ||||| |||||||||||    
T  18325995 gtggtagaaaaggacatgcaattgcagattgcaagcatgatgatgtggtgtgtttcaa 18325938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 40 - 197
Target Start/End: Complemental strand, 18660154 - 18659997
Alignment:
Q  40 aagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgtt 139  Q
    ||||||||||||  ||||| ||| ||||| ||||||| ||||||||||||  |||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  18660154 aagaggaaagagaatcctactgaagttgtttgttaccgatgtggagagaaatgtcacaagagtaatgcttgtactggtgatgcgaagcggtgttcccgtt 18660055  T
Q  140 gtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaa 197  Q
    |||| |||||||| ||| | |||||||| || ||||||||| |||| |||||||||||    
T  18660054 gtggcagaaaagggcatacaattgcagattgcaagcatgaaaatgtggtgtgtttcaa 18659997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 23084910 - 23085031
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || || ||||||||||||||| |  | |||||||| ||||||  |||||||||||  ||||| ||| | ||| |||| ||||||||||    
T  23084910 tgtggtgagaaaggccataagagtaatgcttgtgctagagatgtgaaacggtgtttccgttgtggtaagaaagggcatactattacagaatgtaagcatg 23085009  T
Q  179 aagatgttgtgtgtttcaattg 200  Q
    | |||||||||||||| |||||    
T  23085010 atgatgttgtgtgttttaattg 23085031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 18182473 - 18182582
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| | ||| |||||||||||||||||  | |||||||| ||||||  |||||||||||  ||||||||| || || || | ||||||||||    
T  18182473 tgtggtgagaaagatcaaaagagtaatgcttgtacttgggatgtgaaacggtgtttccgttgtggtaagaaaggacatacgcttacataatgtaagcatg 18182572  T
Q  179 aagatgttgt 188  Q
    | ||||||||    
T  18182573 atgatgttgt 18182582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 40 - 197
Target Start/End: Original strand, 1326 - 1483
Alignment:
Q  40 aagaggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgtt 139  Q
    ||||||||||||  ||||| ||| ||||| ||||||| ||| |||||||| |||||||||||||||| |||||| |||||||||||||||||| ||| ||    
T  1326 aagaggaaagagaatcctactgaagttgtttgttaccgatgaggagagaaaggtcacaagagtaatggttgtactggtgatgtgaagcggtgttcccatt 1425  T
Q  140 gtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaa 197  Q
    |||| |||||||| ||| | |||||||| || |||||||||||||| |||||||||||    
T  1426 gtggcagaaaagggcatacaattgcagattgcaagcatgaagatgtggtgtgtttcaa 1483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 79 - 194
Target Start/End: Complemental strand, 18206 - 18091
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || || ||||||||||||||| | || |||||||||||||||  |||||||||||  ||||||||| || || |||||||||||||||    
T  18206 tgtggtgagaaaggccataagagtaatgcttgttctggggatgtgaagcggtgtttccgttgtggtaagaaaggacatacgcttacagagtgtaagcatg 18107  T
Q  179 aagatgttgtgtgttt 194  Q
    | |||||||| |||||    
T  18106 atgatgttgtatgttt 18091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 2361 - 2260
Alignment:
Q  78 atgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcat 177  Q
    |||||||||||| |||||||||||||| ||||||||  |||||||||| ||||||  |||||||||||| || |||||| | |||||||| || ||||||    
T  2361 atgtggagagaaaggtcacaagagtaacgcttgtactagtgatgtgaaacggtgtttccgttgtggtaggaagggacatacaattgcagattgcaagcat 2262  T
Q  178 ga 179  Q
    ||    
T  2261 ga 2260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 5468 - 5326
Alignment:
Q  60 tgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcg 159  Q
    ||||||||| || ||||  ||||| | ||| || |||||||||||||||||||| || |||||||| | ||||  |||||||||||  ||||| ||| |     
T  5468 tgaggttgtttgctacccttgtggtgtgaaaggccacaagagtaatgcttgtactggggatgtgaaacagtgtttccgttgtggtaagaaagggcatact 5369  T
Q  160 attgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    ||| |||| ||||||||||| ||||| ||||||||||| ||||    
T  5368 attacagaatgtaagcatgatgatgtggtgtgtttcaaatgca 5326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 9294 - 9409
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| |||||||| |||||||||||||||||||| || |||||||| |||||   |||||||||||  || || ||| | ||| |||| |||||||||     
T  9294 tgtggtgagaagggccacaagagtaatgcttgtactggagatgtgaaacggtgcttccgttgtggtaagaaggggcatactattacagaatgtaagcatt 9393  T
Q  179 aagatgttgtgtgttt 194  Q
    | ||||||||||||||    
T  9394 atgatgttgtgtgttt 9409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 23259 - 23356
Alignment:
Q  97 aagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgttt 194  Q
    ||||||||||||||||  || ||| |||| ||||||  ||||||||| |  ||||| ||| | ||| |||| ||||||||||| || |||||||||||    
T  23259 aagagtaatgcttgtaatggagatctgaaacggtgtttccgttgtggcaagaaaggtcatactattacagaatgtaagcatgatgacgttgtgtgttt 23356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 22523908 - 22523785
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || |||| ||||||||||||| | || |||||||| ||||||  |||||||||||  ||||| ||| |  |||| |||||||||||||    
T  22523908 tgtggcgagaaaggccacaggagtaatgcttgtcctggagatgtgaaacggtgtttccgttgtggtaagaaagggcatgcacttgctgagtgtaagcatg 22523809  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    | ||| ||||||| ||||||||||    
T  22523808 atgatattgtgtgcttcaattgca 22523785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 3274509 - 3274446
Alignment:
Q  134 cccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaa 197  Q
    |||||||||| |||||||| |||   |||||||| || |||||||||||||| |||||||||||    
T  3274509 cccgttgtggcagaaaagggcatataattgcagattgcaagcatgaagatgtggtgtgtttcaa 3274446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 22710638 - 22710706
Alignment:
Q  64 gttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgt 132  Q
    ||||| |||| || ||||||||| |||||||| ||| |||| |||||||  ||||||||||| ||||||    
T  22710638 gttgtttgtttccgatgtggagaaaagggtcataagtgtaacgcttgtaatggtgatgtgaaacggtgt 22710706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 24817320 - 24817435
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| |||||||| |||||||||||||||||||| || |||||||| |||||   |||||||||||  || || ||| | ||| |||| |||||||||     
T  24817320 tgtggtgagaagggccacaagagtaatgcttgtactggagatgtgaaacggtgcttccgttgtggtaagaaggggcatactattacagaatgtaagcatt 24817419  T
Q  179 aagatgttgtgtgttt 194  Q
    | ||||||||||||||    
T  24817420 atgatgttgtgtgttt 24817435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 19647867 - 19647752
Alignment:
Q  64 gttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattg 163  Q
    ||||| |||| || |||||||||||| |||||||||||||| ||||||   || ||||| |||||||||  ||||||||| ||||||| |||  | ||||    
T  19647867 gttgtttgtttccgatgtggagagaaaggtcacaagagtaacgcttgtggtggcgatgtaaagcggtgtttccgttgtggcagaaaagaacacacaattg 19647768  T
Q  164 cagagtgtaagcatga 179  Q
    |||| || ||||||||    
T  19647767 cagattgcaagcatga 19647752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 19817798 - 19817683
Alignment:
Q  64 gttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattg 163  Q
    ||||| |||| || |||||||||||| ||| | |||||||| | ||||   || ||||| |||||||||  ||||||||| |||||||||||| | ||||    
T  19817798 gttgtttgtttccgatgtggagagaaaggtgataagagtaacgtttgtgttggcgatgtaaagcggtgtttccgttgtggcagaaaaggacatacaattg 19817699  T
Q  164 cagagtgtaagcatga 179  Q
    |||| || ||||||||    
T  19817698 cagattgcaagcatga 19817683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Original strand, 41025 - 41151
Alignment:
Q  53 ctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaagg 152  Q
    |||||| ||| ||||| ||||||| ||| |||||| | |||||||||||||| |||||||  || ||||| |||||||||  ||||||||| | ||||||    
T  41025 ctcctactgaagttgtttgttaccgatggggagaggaaggtcacaagagtaacgcttgtaggggcgatgtaaagcggtgtttccgttgtggcataaaagg 41124  T
Q  153 acattcgattgcagagtgtaagcatga 179  Q
    |||| | ||| |||| || ||||||||    
T  41125 acatacaatttcagattgcaagcatga 41151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 24693 - 24567
Alignment:
Q  53 ctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaagg 152  Q
    |||||| ||| ||||| | || || ||| |||||||| |||||||||||||| ||||||   || ||||| |||||||||  ||||||||| ||||||||    
T  24693 ctcctactgaagttgtttctttccgatgcggagagaaaggtcacaagagtaacgcttgtggtggcgatgtaaagcggtgtttccgttgtggcagaaaagg 24594  T
Q  153 acattcgattgcagagtgtaagcatga 179  Q
    |||| | |||||||| || ||||||||    
T  24593 acatacaattgcagattgcaagcatga 24567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 179
Target Start/End: Complemental strand, 21410424 - 21410298
Alignment:
Q  53 ctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaagg 152  Q
    |||||| ||| ||||| |||| || |||||||||||| ||||| |||||||| ||||||   || ||||| ||||||| |  ||||||||| ||||||||    
T  21410424 ctcctactgaagttgtgtgtttccgatgtggagagaaaggtcataagagtaacgcttgtggtggcgatgtaaagcggtatttccgttgtggcagaaaagg 21410325  T
Q  153 acattcgattgcagagtgtaagcatga 179  Q
    |||| | |||||||| || ||||||||    
T  21410324 acatacaattgcagattgcaagcatga 21410298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 21631521 - 21631644
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || |||| ||||||||||||||| || |||||||| || |||  || ||||||||  ||| | ||| | ||| |||| ||||||||||    
T  21631521 tgtggtgagaaaggccacacgagtaatgcttgtactggggatgtgaaacgatgtttccattgtggtaagaaatggcatactattacagaatgtaagcatg 21631620  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    | ||||| ||||||||||| ||||    
T  21631621 atgatgtggtgtgtttcaactgca 21631644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 23474458 - 23474336
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || || ||||||||||||||| | || |||||||| ||||||   ||||||||||  || || ||| |  |||| || ||||||||||    
T  23474458 tgtggtgagaaaggccataagagtaatgcttgtcctgg-gatgtgaaacggtgttttcgttgtggtaagaaggggcatactcttgctgaatgtaagcatg 23474360  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    |  |||||||||||||||||||||    
T  23474359 attatgttgtgtgtttcaattgca 23474336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 20824726 - 20824668
Alignment:
Q  52 gctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttg 110  Q
    |||||| |||| ||||| |||||| ||||||| | |||||| |||||||||||||||||    
T  20824726 gctcctgttgatgttgtttgttacaaatgtggtgtgaagggccacaagagtaatgcttg 20824668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 21332190 - 21332231
Alignment:
Q  161 ttgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    |||| |||||||| ||||| ||||||||||||||||||||||    
T  21332190 ttgctgagtgtaaacatgatgatgttgtgtgtttcaattgca 21332231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 441995 - 441898
Alignment:
Q  97 aagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgttt 194  Q
    ||||||||||||||||| || |||||||| ||||||  |||||||||||  ||||| ||| | ||| |||| ||||| ||||| ||||||||||||||    
T  441995 aagagtaatgcttgtactggagatgtgaaacggtgtttccgttgtggtaagaaagggcatactattacagaatgtaaacatgatgatgttgtgtgttt 441898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 14922 - 15037
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || || ||||||||||||||||| || |||||||| ||||||  ||||||||| |  ||||| ||| | ||| || | ||||||||||    
T  14922 tgtggtgagaaaggccataagagtaatgcttgtactggagatgtgaaacggtgtttccgttgtggcaagaaagggcatactattacataatgtaagcatg 15021  T
Q  179 aagatgttgtgtgttt 194  Q
    | ||||||||||||||    
T  15022 atgatgttgtgtgttt 15037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 26713 - 26590
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || |||||||||||||||||||| || |||||||| || |||  |||||||||||  |||||  || | ||| || | ||||||||||    
T  26713 tgtggtgagaaaggccacaagagtaatgcttgtactggagatgtgaaacgatgtttccgttgtggtaagaaagggtatactattacaaaatgtaagcatg 26614  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    | || ||||||||||| |||||||    
T  26613 atgaagttgtgtgttttaattgca 26590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 16533 - 16670
Alignment:
Q  60 tgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcg 159  Q
    ||||||||| || ||| | ||||| |||||||| |||||||||||||||||| | |||||||| || ||||||  || ||||||||| ||||| ||| |     
T  16533 tgaggttgtttgctacaagtgtggtgagaagggccacaagagtaatgcttgtcctggtgatgtaaaacggtgtttccattgtggtaggaaagggcatact 16632  T
Q  160 attgcagagtgtaagcatgaagatgttgtgtgtttcaa 197  Q
    |||  |||||| ||| |||| ||| |  ||||||||||    
T  16633 attatagagtgcaagaatgatgatatgatgtgtttcaa 16670  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 14162838 - 14162679
Alignment:
Q  43 aggaaagaggctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtg 142  Q
    |||||||| |||||| ||||| ||||||| ||    ||||| | ||| || ||||||||| |||||||| | || ||||||||| | |||   || ||||    
T  14162838 aggaaagatgctcctgttgagattgtctgctatgcttgtggtgtgaaaggccacaagagtgatgcttgtcctggggatgtgaagagatgttttcgctgtg 14162739  T
Q  143 gtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    |||  ||||| ||| |  |||| |||||||||||||||||||||||||| || |||||||    
T  14162738 gtaagaaaggtcatacacttgctgagtgtaagcatgaagatgttgtgtgctttaattgca 14162679  T

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Target: scaffold0270 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 7177 - 7111
Alignment:
Q  136 cgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    ||||||||||  ||||| ||| |  |||| |||||||||||||| ||||||||||||||||||||||    
T  7177 cgttgtggtaagaaagggcatacacttgctgagtgtaagcatgatgatgttgtgtgtttcaattgca 7111  T

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Target: scaffold0270; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 14307 - 14241
Alignment:
Q  136 cgttgtggtagaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaattgca 202  Q
    ||||||||||  ||||| ||| |  |||| |||||||||||||| ||||||||||||||||||||||    
T  14307 cgttgtggtaagaaagggcatacacttgctgagtgtaagcatgatgatgttgtgtgtttcaattgca 14241  T

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Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 93810 - 93868
Alignment:
Q  52 gctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttg 110  Q
    |||||| |||||||||| |||||| ||||||| | |||||| |||||||||||||||||    
T  93810 gctcctgttgaggttgtttgttacaaatgtggtgtgaagggccacaagagtaatgcttg 93868  T

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Target: scaffold0010 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 180755 - 180813
Alignment:
Q  52 gctcctattgaggttgtctgttaccaatgtggagagaagggtcacaagagtaatgcttg 110  Q
    |||||| |||||||||| |||||| ||||||| | |||||| |||||||||||||||||    
T  180755 gctcctgttgaggttgtttgttacaaatgtggtgtgaagggccacaagagtaatgcttg 180813  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 194
Target Start/End: Original strand, 23476 - 23591
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || || ||||||||||||||| | || |||||||| ||||||   ||||||||||  ||||| ||| |  |||| || ||||||||||    
T  23476 tgtggtgagaaaggccataagagtaatgcttgtcctggggatgtgaaacggtgttttcgttgtggtaagaaagggcatacacttgccgaatgtaagcatg 23575  T
Q  179 aagatgttgtgtgttt 194  Q
    | |||||||| |||||    
T  23576 atgatgttgtatgttt 23591  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 15627845 - 15627722
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || ||||||||||| ||||||||  | |||||||| | ||||  || ||||||||  ||||| ||| | ||| |||| || |||||||    
T  15627845 tgtggtgagaaaggccacaagagtaacgcttgtacttgggatgtgaaacagtgtttccattgtggtaagaaagggcatactattacagaatgcaagcatg 15627746  T
Q  179 aagatgttgtgtgtttcaattgca 202  Q
    | ||||| ||||||||||| ||||    
T  15627745 atgatgtggtgtgtttcaactgca 15627722  T

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Target: scaffold0333 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 19011 - 18958
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgt 132  Q
    ||||| ||||| || |||||||||||||||||| |||| ||||||||| |||||    
T  19011 tgtggtgagaaaggccacaagagtaatgcttgtcccggggatgtgaagaggtgt 18958  T

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Target: scaffold0077 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 57557 - 57678
Alignment:
Q  79 tgtggagagaagggtcacaagagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggtagaaaaggacattcgattgcagagtgtaagcatg 178  Q
    ||||| ||||| || || ||||||||||||||| |  | |||||||| |||||    ||||||||||  ||||| |||    |||| |||||||||||||    
T  57557 tgtggcgagaaaggccataagagtaatgcttgtccttgggatgtgaaacggtgctttcgttgtggtaagaaagggcatagacttgctgagtgtaagcatg 57656  T
Q  179 aagatgttgtgtgtttcaattg 200  Q
    | || |||||||||||||||||    
T  57657 atgacgttgtgtgtttcaattg 57678  T

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Target: scaffold0342 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 202
Target Start/End: Original strand, 14228 - 14332
Alignment:
Q  99 gagtaatgcttgtaccggtgatgtgaagcggtgtacccgttgtggta-gaaaaggacattcgattgcagagtgtaagcatgaagatgttgtgtgtttcaa 197  Q
    ||||||||||||| | || |||||||| ||||||   |||||||||| |||  || ||| |  |||| || ||||||||||| |||||||| ||||||||    
T  14228 gagtaatgcttgtcctggggatgtgaaacggtgttttcgttgtggtaagaagggggcatactcttgctgaatgtaagcatgatgatgttgtatgtttcaa 14327  T
Q  198 ttgca 202  Q
    |||||    
T  14328 ttgca 14332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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