View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_56 (Length: 206)
Name: NF9960_1D_low_56
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 21592691 - 21592882
Alignment:
| Q |
7 |
aagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgcca |
106 |
Q |
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| T |
21592691 |
aagatttgtgtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatccaaaggagaaagtgaattaaaggacgaacaaggagtatgcca |
21592790 |
T |
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| Q |
107 |
tggagtttcttccctttgaggagcatcttcccattcccatcggcgattgtgcaagtcatatctgttaggctttctccttgaaccttcatatc |
198 |
Q |
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| T |
21592791 |
tggagtttcttccctttgaggagcatcttcccattcccatcggcgattgtgcaagtcatatctgttaggctttctccttgaaccttcatatc |
21592882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 42095210 - 42095134
Alignment:
| Q |
7 |
aagatttgcgtgaagagccagaagcccgtattggaaaaggagacggagaaacatgatccaaaggagaaagtgaatta |
83 |
Q |
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|||||||| ||||||||| ||||| |||||||||| |||||||||||||||||| ||| |||||||| |||||||| |
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| T |
42095210 |
aagatttgactgaagagccggaagctcgtattggaacaggagacggagaaacatggtcccaaggagaaggtgaatta |
42095134 |
T |
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