View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_58 (Length: 202)

Name: NF9960_1D_low_58
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_58
NF9960_1D_low_58
[»] chr4 (6 HSPs)
chr4 (34-181)||(40199649-40199796)
chr4 (79-182)||(39797848-39797950)
chr4 (119-174)||(1551622-1551676)
chr4 (145-182)||(12717155-12717192)
chr4 (148-184)||(22049440-22049476)
chr4 (91-182)||(22621427-22621516)
[»] chr1 (8 HSPs)
chr1 (80-181)||(33125844-33125943)
chr1 (140-184)||(12539403-12539447)
chr1 (127-182)||(8737380-8737434)
chr1 (105-174)||(13998974-13999041)
chr1 (139-182)||(16575086-16575129)
chr1 (138-177)||(25572511-25572550)
chr1 (96-167)||(34329580-34329651)
chr1 (138-182)||(2513639-2513683)
[»] scaffold0007 (1 HSPs)
scaffold0007 (84-182)||(202088-202183)
[»] chr6 (6 HSPs)
chr6 (118-182)||(16361074-16361138)
chr6 (125-177)||(16338313-16338364)
chr6 (105-180)||(3601242-3601313)
chr6 (125-182)||(16329105-16329161)
chr6 (125-182)||(16339881-16339937)
chr6 (138-172)||(1419109-1419143)
[»] chr5 (8 HSPs)
chr5 (138-182)||(26905676-26905720)
chr5 (138-182)||(25487647-25487691)
chr5 (134-177)||(39915592-39915635)
chr5 (82-159)||(11052873-11052951)
chr5 (82-179)||(11824875-11824970)
chr5 (138-179)||(32764463-32764504)
chr5 (140-177)||(35402082-35402119)
chr5 (138-182)||(18573358-18573402)
[»] chr3 (5 HSPs)
chr3 (74-182)||(4219159-4219263)
chr3 (119-181)||(31348467-31348529)
chr3 (105-174)||(3961817-3961884)
chr3 (148-184)||(2147776-2147812)
chr3 (120-172)||(55125495-55125545)
[»] chr2 (11 HSPs)
chr2 (80-182)||(17116440-17116543)
chr2 (86-184)||(12994247-12994344)
chr2 (145-184)||(17767587-17767626)
chr2 (135-180)||(31811732-31811777)
chr2 (145-181)||(6431426-6431462)
chr2 (138-182)||(20607350-20607394)
chr2 (139-182)||(38233612-38233655)
chr2 (145-183)||(2763545-2763583)
chr2 (140-174)||(11426682-11426716)
chr2 (142-182)||(17792517-17792557)
chr2 (139-183)||(38450278-38450322)
[»] chr8 (8 HSPs)
chr8 (135-184)||(4429097-4429146)
chr8 (135-172)||(12832389-12832426)
chr8 (119-174)||(977270-977323)
chr8 (139-174)||(9628911-9628946)
chr8 (81-170)||(30039389-30039476)
chr8 (82-170)||(7281631-7281717)
chr8 (135-184)||(7763578-7763627)
chr8 (145-182)||(32778996-32779033)
[»] chr7 (7 HSPs)
chr7 (138-172)||(33476700-33476734)
chr7 (145-182)||(35306517-35306554)
chr7 (135-182)||(39990212-39990259)
chr7 (119-181)||(2918909-2918970)
chr7 (119-181)||(2924219-2924280)
chr7 (120-174)||(31703259-31703312)
chr7 (145-182)||(29352292-29352329)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 40199796 - 40199649
Alignment:
Q  34 aaaccttaaccgtcgccatctttattcttcctatctatcgaagattggtgatttaaggtcaattttaacctaaaattactcttctaaattatttttcctt 133  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||    
T  40199796 aaaccttaaccgtcgcagtctttattcttcctatctatcgaagattggtgatttaaggtcaattttaacctaaaattagttttctaaattgtttttcctt 40199697  T
Q  134 cttctttttagttaaataagtgatttccacatattttcagtcttcttt 181  Q
    ||| |||| ||||||||||||||||||||||||||| || ||||||||    
T  40199696 ctttttttaagttaaataagtgatttccacatatttccaatcttcttt 40199649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 39797848 - 39797950
Alignment:
Q  79 tggtgatttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttc 178  Q
    |||||||||| |||||||||| ||||||||| |  | | | |||| |||||| || || |||||||||||||||||||||| || ||||||||| |||||    
T  39797848 tggtgatttatggtcaattttgacctaaaatgatccctttgaattgtttttctttatt-tttttagttaaataagtgattttcatatattttcaatcttc 39797946  T
Q  179 tttc 182  Q
    ||||    
T  39797947 tttc 39797950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 1551622 - 1551676
Alignment:
Q  119 aaattatttttccttcttctttttagttaaataagtgatttccacatattttcagt 174  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||    
T  1551622 aaattgtttttccttctt-tttttagttaaataagggatttccacgtattttcagt 1551676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 12717192 - 12717155
Alignment:
Q  145 ttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12717192 ttaaataagtgatttccacatattttcagttttctttc 12717155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 22049476 - 22049440
Alignment:
Q  148 aataagtgatttccacatattttcagtcttctttcat 184  Q
    ||||||||||||||||||||||||||| |||||||||    
T  22049476 aataagtgatttccacatattttcagttttctttcat 22049440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 22621427 - 22621516
Alignment:
Q  91 gtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||||||| | ||||||| |||  ||| |||||||||| |||||| || |||||||||||||||||||  ||||| |||||||||| ||||    
T  22621427 gtcaattttgatctaaaatcacttgtcttaattattttttcttctt-ttattagttaaataagtgatttttacata-tttcagtcttatttc 22621516  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 33125943 - 33125844
Alignment:
Q  80 ggtgatttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttct 179  Q
    ||||||||| |||||||||| ||| ||||| |||| |||||||| |||||||||||  ||| || || ||||||||||||||||||| ||| ||| ||||    
T  33125943 ggtgatttagggtcaattttgacccaaaatcactcatctaaattgtttttccttct--tttataattgaataagtgatttccacataattttagtattct 33125846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 12539447 - 12539403
Alignment:
Q  140 tttagttaaataagtgatttccacatattttcagtcttctttcat 184  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||    
T  12539447 tttagttaaataaatgatttccacatattttcagccttctttcat 12539403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 8737380 - 8737434
Alignment:
Q  127 tttccttcttctttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||    
T  8737380 tttccttctt-tttttagtcaagaaagtgatttccacatattttcagtcttctttc 8737434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 13998974 - 13999041
Alignment:
Q  105 aaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagt 174  Q
    ||||| ||| |||||||||||||||  |||||  |||||||||||||| |||||| ||||||||||||||    
T  13998974 aaaatcacttttctaaattattttttattctt--ttttagttaaataaatgattttcacatattttcagt 13999041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 16575129 - 16575086
Alignment:
Q  139 ttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||||||||||| ||| |||||||||||||||| |||||||||    
T  16575129 ttttagttaaataggtggtttccacatattttcaatcttctttc 16575086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 25572550 - 25572511
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttcagtctt 177  Q
    |||||| |||||||||||||||||||||||||||| ||||    
T  25572550 tttttatttaaataagtgatttccacatattttcaatctt 25572511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 34329580 - 34329651
Alignment:
Q  96 ttttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatat 167  Q
    |||| ||||||||| |||||||||||| |||||||| ||||||||  | |||||||| || ||| |||||||    
T  34329580 ttttgacctaaaatcactcttctaaatcatttttccctcttctttcaatttaaataaatggttttcacatat 34329651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 2513683 - 2513639
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||||||||||||| |||||| || |||||||||||||| ||||    
T  2513683 tttttagttaaataaatgattttcatatattttcagtcttatttc 2513639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 202183 - 202088
Alignment:
Q  84 atttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||| |||||||||  || |||||| || | |||||||||||||||||| ||   |||  |||||||||||||||||||||||||||||| |||||||    
T  202183 atttacggtcaatttagacttaaaatcacccctctaaattatttttccttttt---tttcattaaataagtgatttccacatattttcagtattctttc 202088  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 16361138 - 16361074
Alignment:
Q  118 taaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||| |||||||||||| ||||||||||||||| | ||||||||||||| |||||||| ||||    
T  16361138 taaattgtttttccttcttttttttagttaaataactcatttccacatattgtcagtcttgtttc 16361074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 16338364 - 16338313
Alignment:
Q  125 tttttccttcttctttttagttaaataagtgatttccacatattttcagtctt 177  Q
    |||||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  16338364 tttttccttctt-tttttagttaaataactcatttccacatattttcagtctt 16338313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 3601313 - 3601242
Alignment:
Q  105 aaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttctt 180  Q
    |||||||| | || ||||| ||||||||| |||||    |||||||||||||||||||||||| ||||||||||||    
T  3601313 aaaattacacctcaaaattgtttttccttattctt----gttaaataagtgatttccacatatgttcagtcttctt 3601242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 16329161 - 16329105
Alignment:
Q  125 tttttccttcttctttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||||| ||||||||||||||| | |||| ||||||||||||||||| ||||    
T  16329161 tttttccttctt-tttttagttaaataattcattttcacatattttcagtcttgtttc 16329105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 16339937 - 16339881
Alignment:
Q  125 tttttccttcttctttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||||| ||||||||||||||| | |||||||||||||| ||||||| ||||    
T  16339937 tttttccttctt-tttttagttaaataactcatttccacatatttgcagtcttgtttc 16339881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 1419143 - 1419109
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttca 172  Q
    |||||||||||||||||||||| ||||||||||||    
T  1419143 tttttagttaaataagtgattttcacatattttca 1419109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 26905720 - 26905676
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  26905720 ttttcagttaaataagtgatttccacatattttcagtcttctttc 26905676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 25487647 - 25487691
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||||||||||||||| |||||||||||| | |||||||    
T  25487647 tttttagttaaataagtgattttcacatattttcattgttctttc 25487691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 39915592 - 39915635
Alignment:
Q  134 cttctttttagttaaataagtgatttccacatattttcagtctt 177  Q
    ||||||| || || ||||||||||||||||||||||||||||||    
T  39915592 cttctttctacttgaataagtgatttccacatattttcagtctt 39915635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 11052873 - 11052951
Alignment:
Q  82 tgatttaaggtcaa-ttttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgattt 159  Q
    ||||||| |||||| |||| ||| |||||||||||||||||| |||||||  | ||| ||||| ||||||||| |||||    
T  11052873 tgatttatggtcaacttttgacccaaaattactcttctaaatcatttttctcttttccttttatttaaataagcgattt 11052951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 11824970 - 11824875
Alignment:
Q  82 tgatttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttct 179  Q
    |||||||||||||||||| | | ||||| |  | ||  ||||||||||||||||||   ||||||||| ||||| ||| |||||||||| ||||||||    
T  11824970 tgatttaaggtcaattttgatccaaaatcatccctccgaattatttttccttcttc--attagttaaacaagtgtttttcacatattttgagtcttct 11824875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 32764463 - 32764504
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttcagtcttct 179  Q
    ||||||||||||||| | ||||||||||||||||| ||||||    
T  32764463 tttttagttaaataaatcatttccacatattttcaatcttct 32764504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 35402082 - 35402119
Alignment:
Q  140 tttagttaaataagtgatttccacatattttcagtctt 177  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  35402082 tttagttaaataagtgatttccacaaattttcaatctt 35402119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 182
Target Start/End: Original strand, 18573358 - 18573402
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||||| ||||||||| || ||||||||| |||||||||    
T  18573358 tttttagttaaacaagtgattttcatatattttcaatcttctttc 18573402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 4219159 - 4219263
Alignment:
Q  74 aagattggtgatttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcag 173  Q
    ||||||||| ||||| |||||||||| |||| |||| |||| ||  |||| | |||||||| |    ||||||||||||||||||| |||||||||||||    
T  4219159 aagattggtaatttatggtcaattttgacctgaaatcactcatccgaattgtatttccttcct----ttagttaaataagtgattttcacatattttcag 4219254  T
Q  174 tcttctttc 182  Q
    | |||||||    
T  4219255 ttttctttc 4219263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 31348467 - 31348529
Alignment:
Q  119 aaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttcttt 181  Q
    ||||| |||||| ||||| |||||||||||||||||||||||||||||  || ||||||||||    
T  31348467 aaattgtttttctttcttttttttagttaaataagtgatttccacataaattaagtcttcttt 31348529  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 3961884 - 3961817
Alignment:
Q  105 aaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagt 174  Q
    ||||| ||| |||| ||||||||||  |||||  |||||||||||||| |||||||||||||||||||||    
T  3961884 aaaatcacttttctgaattattttttattctt--ttttagttaaataaatgatttccacatattttcagt 3961817  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 2147776 - 2147812
Alignment:
Q  148 aataagtgatttccacatattttcagtcttctttcat 184  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2147776 aataagtgatttccacatattttcagttttctttcat 2147812  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 55125495 - 55125545
Alignment:
Q  120 aattatttttccttcttctttttagttaaataagtgatttccacatattttca 172  Q
    ||||||||||| |||||  |||||||||||||| ||| |||||||||||||||    
T  55125495 aattatttttctttctt--ttttagttaaataaatgacttccacatattttca 55125545  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 80 - 182
Target Start/End: Complemental strand, 17116543 - 17116440
Alignment:
Q  80 ggtgatttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttcttttt-agttaaataagtgatttccacatattttcagtcttc 178  Q
    ||||||||| |||||||||| ||||||||| |  | ||  |||| ||||||||| || ||||| | |||||| |||||||| ||||||||||||||||||    
T  17116543 ggtgatttatggtcaattttgacctaaaatcatccgtccgaattgtttttccttttttttttttatttaaattagtgattttcacatattttcagtcttc 17116444  T
Q  179 tttc 182  Q
    ||||    
T  17116443 tttc 17116440  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 184
Target Start/End: Complemental strand, 12994344 - 12994247
Alignment:
Q  86 ttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttctttcat 184  Q
    ||||| |||||||| ||  ||||| |||| ||| |||| |||||||||||| |||||||||| |||||  ||||||||||||||| ||| |||||||||    
T  12994344 ttaagatcaattttgactcaaaatcactcatctgaattgtttttccttctt-tttttagttacataagaaatttccacatatttttagttttctttcat 12994247  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 17767626 - 17767587
Alignment:
Q  145 ttaaataagtgatttccacatattttcagtcttctttcat 184  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  17767626 ttaaataagtgatttccacatattttcagttttctttcat 17767587  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 31811732 - 31811777
Alignment:
Q  135 ttctttttagttaaataagtgatttccacatattttcagtcttctt 180  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||    
T  31811732 ttctatttaattaaataagtgattttcacatattttcagtcttctt 31811777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 6431462 - 6431426
Alignment:
Q  145 ttaaataagtgatttccacatattttcagtcttcttt 181  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6431462 ttaaataagtgatttccacatattttcagttttcttt 6431426  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 20607394 - 20607350
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||    
T  20607394 tttttagttaactaagtgattttcacatattttcagttttctttc 20607350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 38233612 - 38233655
Alignment:
Q  139 ttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||||||||||||||| |||||||||||||| | |||||||||    
T  38233612 ttttagttaaataagtgttttccacatatttttattcttctttc 38233655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 2763583 - 2763545
Alignment:
Q  145 ttaaataagtgatttccacatattttcagtcttctttca 183  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  2763583 ttaaataagtaattttcacatattttcagtcttctttca 2763545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 11426682 - 11426716
Alignment:
Q  140 tttagttaaataagtgatttccacatattttcagt 174  Q
    ||||||||||| |||||||||||||||||||||||    
T  11426682 tttagttaaatgagtgatttccacatattttcagt 11426716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 17792517 - 17792557
Alignment:
Q  142 tagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||||| ||||| |||||||||||||| |||||||    
T  17792517 tagttaaataagcgattttcacatattttcagttttctttc 17792557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 38450278 - 38450322
Alignment:
Q  139 ttttagttaaataagtgatttccacatattttcagtcttctttca 183  Q
    |||||||||||||| |||||| ||||||||||||||  |||||||    
T  38450278 ttttagttaaataaatgattttcacatattttcagttctctttca 38450322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 4429097 - 4429146
Alignment:
Q  135 ttctttttagttaaataagtgatttccacatattttcagtcttctttcat 184  Q
    ||||||||||||||||| ||||||| |||||||||||| |||||||||||    
T  4429097 ttctttttagttaaataggtgattttcacatattttcaatcttctttcat 4429146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 12832426 - 12832389
Alignment:
Q  135 ttctttttagttaaataagtgatttccacatattttca 172  Q
    |||||||||||||||||| |||||||||||||||||||    
T  12832426 ttctttttagttaaataattgatttccacatattttca 12832389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 174
Target Start/End: Original strand, 977270 - 977323
Alignment:
Q  119 aaattatttttccttcttctttttagttaaataagtgatttccacatattttcagt 174  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||  ||||||||||    
T  977270 aaattgtttttccttctt--ttttagttaaataagtgatttccatgtattttcagt 977323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 9628946 - 9628911
Alignment:
Q  139 ttttagttaaataagtgatttccacatattttcagt 174  Q
    |||||||||||||| |||||||||||||||||||||    
T  9628946 ttttagttaaataaatgatttccacatattttcagt 9628911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 170
Target Start/End: Complemental strand, 30039476 - 30039389
Alignment:
Q  81 gtgatttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatatttt 170  Q
    |||||||| |||||||||| ||| ||||| |||| ||  |||| |||||||||||  ||| || || |||| ||||||||||||||||||    
T  30039476 gtgatttatggtcaattttgacccaaaatcactcatccgaattgtttttccttct--tttctaattgaatatgtgatttccacatatttt 30039389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 7281631 - 7281717
Alignment:
Q  82 tgatttaaggtcaattttaacctaaaattactcttctaaattatttttccttcttctttttagttaaataagtgatttccacatatttt 170  Q
    ||||||| |||||||| ||||||||||| || | ||  |||| |||||| |||||  || ||||| ||||||||||||||| |||||||    
T  7281631 tgatttagggtcaattctaacctaaaatcacccatccgaattgtttttctttctt--ttctagttgaataagtgatttccatatatttt 7281717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 7763627 - 7763578
Alignment:
Q  135 ttctttttagttaaataagtgatttccacatattttcagtcttctttcat 184  Q
    |||||||||||||||||||||||||  ||||||||| | |||| ||||||    
T  7763627 ttctttttagttaaataagtgattttaacatattttaaatcttatttcat 7763578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 32779033 - 32778996
Alignment:
Q  145 ttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  32779033 ttaaataagagatttccacatattttcagttttctttc 32778996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 33476734 - 33476700
Alignment:
Q  138 tttttagttaaataagtgatttccacatattttca 172  Q
    |||||||||||||||||||||||||||||||||||    
T  33476734 tttttagttaaataagtgatttccacatattttca 33476700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 35306554 - 35306517
Alignment:
Q  145 ttaaataagtgatttccacatattttcagtcttctttc 182  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  35306554 ttaaataagtgatttacacatattttcagtcttctttc 35306517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 182
Target Start/End: Complemental strand, 39990259 - 39990212
Alignment:
Q  135 ttctttttagttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||| |||||||||||| ||||||| |||||||||||||| |||||||    
T  39990259 ttctctttagttaaataggtgattttcacatattttcagttttctttc 39990212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 2918970 - 2918909
Alignment:
Q  119 aaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttcttt 181  Q
    ||||| |||||| ||||| ||||| ||||||||||||||||||||||  ||| ||||||||||    
T  2918970 aaattgtttttctttctt-tttttggttaaataagtgatttccacatgatttaagtcttcttt 2918909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 2924280 - 2924219
Alignment:
Q  119 aaattatttttccttcttctttttagttaaataagtgatttccacatattttcagtcttcttt 181  Q
    ||||| |||||| ||||| ||||| ||||||||||||||||||||||  ||| ||||||||||    
T  2924280 aaattgtttttctttctt-tttttggttaaataagtgatttccacatgatttaagtcttcttt 2924219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 31703259 - 31703312
Alignment:
Q  120 aattatttttccttcttctttttagttaaataagtgatttccacatattttcagt 174  Q
    |||| |||||||||||| ||||||||||||||| |||||| || |||||||||||    
T  31703259 aattgtttttccttctt-tttttagttaaataaatgattttcatatattttcagt 31703312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 29352292 - 29352329
Alignment:
Q  145 ttaaataagtgatttccacatattttcagtcttctttc 182  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  29352292 ttaaataagtgatttccacatattctcagttttctttc 29352329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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