View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_59 (Length: 202)
Name: NF9960_1D_low_59
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 7449512 - 7449345
Alignment:
| Q |
14 |
gaagatgaagaagatgagtttgtagttgaaatcttaataccagtaagaagaaacctatcatgtttttgtgtaagttcattcactgaatgaatagacgaat |
113 |
Q |
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| T |
7449512 |
gaagatgaagaagatgagtttgtagttgaaatcttaataccagtaagaagaaatctatcatgtttttgtgtaagttcattcactgaatgaatagatgaat |
7449413 |
T |
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| Q |
114 |
cacaatctttgcatagaattgctctgtcttgtttacataacacaaaagctcttctctcctaacataag |
181 |
Q |
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| T |
7449412 |
cacaatctttgcatagaattgctctgtcttgtttacataacacaaaagctcttctctcctaacataag |
7449345 |
T |
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