View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_1D_low_8 (Length: 467)

Name: NF9960_1D_low_8
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_1D_low_8
NF9960_1D_low_8
[»] chr7 (5 HSPs)
chr7 (14-464)||(28936876-28937333)
chr7 (14-464)||(32021419-32021867)
chr7 (373-464)||(15468424-15468515)
chr7 (363-419)||(1538149-1538205)
chr7 (363-451)||(11842559-11842647)
[»] chr1 (6 HSPs)
chr1 (14-194)||(15566935-15567125)
chr1 (346-464)||(3833598-3833716)
chr1 (360-464)||(8681515-8681619)
chr1 (193-333)||(15566226-15566367)
chr1 (346-410)||(46742028-46742092)
chr1 (390-463)||(8274332-8274405)
[»] chr3 (5 HSPs)
chr3 (346-464)||(2899718-2899836)
chr3 (366-451)||(26421242-26421327)
chr3 (363-462)||(4861249-4861348)
chr3 (363-462)||(4881256-4881355)
chr3 (409-450)||(11415971-11416012)
[»] chr4 (5 HSPs)
chr4 (363-464)||(13327272-13327373)
chr4 (364-464)||(44453252-44453351)
chr4 (373-464)||(8656258-8656349)
chr4 (398-463)||(41068671-41068736)
chr4 (373-462)||(22391745-22391834)
[»] chr5 (4 HSPs)
chr5 (373-464)||(17065428-17065520)
chr5 (396-467)||(38302644-38302715)
chr5 (362-422)||(25247838-25247898)
chr5 (362-422)||(25311622-25311682)
[»] chr2 (5 HSPs)
chr2 (379-464)||(30418801-30418886)
chr2 (346-459)||(28948661-28948774)
chr2 (373-464)||(32234595-32234686)
chr2 (363-432)||(24361001-24361070)
chr2 (397-451)||(24440159-24440213)
[»] scaffold0356 (1 HSPs)
scaffold0356 (363-432)||(13521-13590)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 464
Target Start/End: Original strand, 28936876 - 28937333
Alignment:
Q  14 atggacatcatgtagtggagcatggttggattaatggggattctgacgtctgtgagtttgattt----gtgttacaaagagagcaaattggtgagacata 109  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||    
T  28936876 atggtcatcatgtagtggagcatgattggattaatggggattctgacgtctgtgagtttgatttagttgtgttacgaagagagcaaattggtgagacata 28936975  T
Q  110 gtacttatgaatctttgatactttggttggagattgtgttaccaaatatttgcaagacaattattttgacaagaacttcaaagagtctcatttgaggaga 209  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28936976 gtacttaggaatctttgatactttggttggagattgtgttaccaaatatttgcaagacaattattttgacaagaatttcaaagagtctcatttgaggaga 28937075  T
Q  210 aaagcgaaagaatcactcaagagagcatacctaggtgcnnnnnnnnnntcagagatgctgaaaagtcggatgaaacttgcatcataggttcaacatatgt 309  Q
    ||||| ||| || |||||||||||||||||||||||||          | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28937076 aaagccaaataaacactcaagagagcatacctaggtgcaaaaaaaaaattagagatgctgaaaagtcagatgaaacttgcatcataggttcaacatatgt 28937175  T
Q  310 gattataataaatggaggaaaact-gt-----agcccaatgaatattggaatgtctgagttcaaggttatgtttggttagacaggtttccaacggagttg 403  Q
    ||||||||||||||||| |||||| ||      |||||||||||||||||||||   |||||||||||||||||||||||||||| ||||| ||||||||    
T  28937176 gattataataaatggagaaaaactcgtgctactgcccaatgaatattggaatgt---agttcaaggttatgtttggttagacaggcttccagcggagttg 28937272  T
Q  404 catatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttttt 464  Q
     ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  28937273 tatatggatttctttcgagatagaattggcttgcccaattataaattttagtagtcttttt 28937333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 14 - 464
Target Start/End: Original strand, 32021419 - 32021867
Alignment:
Q  14 atggacatcatgtagtggagcatggttggattaatggggattctgacgtctgtgagtttgattt----gtgttacaaagagagcaaattggtgagacata 109  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| |||||    
T  32021419 atggtcatcatgtagtggagcatgattggattaatggggattctgacgtctgtgagtttgatttatttgtgttacaaagagagcaaattggtgaaacata 32021518  T
Q  110 gtacttatgaatctttgatactttggttggagattgtgttaccaaatatttgcaagacaattattttgacaagaacttcaaagagtctcatttgaggaga 209  Q
    ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32021519 gtacttaggaatctttcatactttggttggaggttgtgttaccaaatatttgcaagacaattattttgacaagaatttcaaagagtctcatttgaggaga 32021618  T
Q  210 aaagcgaaagaatcactcaagagagcatacctaggtgcnnnnnnnnnntcagagatgctgaaaagtcggatgaaacttgcatcataggttcaacatatgt 309  Q
    ||||| |||||| |||  ||||||||| ||||||||||          |||||||||         | |||||||||||||||||||| ||||||| |||    
T  32021619 aaagccaaagaaacacggaagagagcacacctaggtgc--aacaaatttcagagatg---------ccgatgaaacttgcatcataggatcaacatttgt 32021707  T
Q  310 gattataataaatggaggaaaact-gt-----agcccaatgaatattggaatgtctgagttcaaggttatgtttggttagacaggtttccaacggagttg 403  Q
    ||||||||||||||||  |||||| ||      |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  32021708 gattataataaatgga-aaaaactcgtgcttctgcccaatgaatattggaatgtctgaggtcaaggttatgtttggttagacaggcttccaacggagttg 32021806  T
Q  404 catatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttttt 464  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32021807 tatatgaatttctttcgagacagaattggcttgcccaattatagattttagtagtattttt 32021867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 15468515 - 15468424
Alignment:
Q  373 tgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttttt 464  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||    
T  15468515 tgtttggttagacaggcttccagcggagttacatatggatttctttcaagacagaattggcttgcccaattgtagattttagaagtcgtttt 15468424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 1538205 - 1538149
Alignment:
Q  363 ttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttc 419  Q
    |||| |||| |||||||||||||| | |||| |||||||||||||||||||||||||    
T  1538205 ttcagggttctgtttggttagacacgcttccgacggagttgcatatggatttctttc 1538149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 451
Target Start/End: Original strand, 11842559 - 11842647
Alignment:
Q  363 ttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattt 451  Q
    |||| |||| |||||||||||||| | ||||    ||||||||| | || |||| |||||||||||||||||| |||||||||||||||    
T  11842559 ttcagggttctgtttggttagacatgcttcctgtagagttgcatttcgacttctatcgagacagaattggcttacccaattatagattt 11842647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 15567125 - 15566935
Alignment:
Q  14 atggacatcatgtagtggagcatggttggattaatggggattctgacgtctgtgagtttgatt----tgtgttacaaagagagcaaattggtgagacata 109  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||    |||| |||||||||||||||||||||||||| |    
T  15567125 atggtcatcatgtagtggagcatgattggattaatggtgattctgatgactgtgagtttgattcagttgtgatacaaagagagcaaattggtgagacaga 15567026  T
Q  110 ------gtacttatgaatctttgatactttggttggagattgtgttaccaaatatttgcaagacaattattttgacaagaacttcaaagag 194  Q
          ||| |   |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  15567025 attgtggtattgtggaatctttgatactttggttggagattgtgttaccaaatatttgcaagccaattattttgacaagaatctcaaagag 15566935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 346 - 464
Target Start/End: Complemental strand, 3833716 - 3833598
Alignment:
Q  346 atattggaatgtctgagttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattat 445  Q
    |||||| |||||||||||||||| || |||||||||||||| | ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  3833716 atattgaaatgtctgagttcaagattttgtttggttagacaagcttccagcggagttgcatatggatttatttcgtgacagaattggcttgcccaattat 3833617  T
Q  446 agattttagtagtcttttt 464  Q
    |||||||||||||| ||||    
T  3833616 agattttagtagtcgtttt 3833598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 360 - 464
Target Start/End: Complemental strand, 8681619 - 8681515
Alignment:
Q  360 gagttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtc 459  Q
    ||||||| |||| |||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||    
T  8681619 gagttcagggttttgtttggttagacacgcttccagcggagttgcatatggatttctatcgagacagaactggcttgcccaactatagattttcgtagtc 8681520  T
Q  460 ttttt 464  Q
     ||||    
T  8681519 gtttt 8681515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 193 - 333
Target Start/End: Complemental strand, 15566367 - 15566226
Alignment:
Q  193 agtctcatttgaggagaaaagcgaaagaatcactcaagagagcatacctaggtgc-nnnnnnnnnntcagagatgctg-aaaagtcggatgaaacttgca 290  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||           ||||||| | || | || || |||||||| ||||    
T  15566367 agtctcatttgaggagaaaagccaaagaaacactcaagagagcatacctaggtgcaaaaacaaagatcagaga-gatgcacaaatcagatgaaacatgca 15566269  T
Q  291 tcataggttcaacatatgtgattataataaatggaggaaaact 333  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||    
T  15566268 tcataggttcaacatctgtgatgataataaatggagaaaaact 15566226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 410
Target Start/End: Original strand, 46742028 - 46742092
Alignment:
Q  346 atattggaatgtctgagttcaaggttatgtttggttagacaggtttccaacggagttgcatatgg 410  Q
    |||||| |||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||    
T  46742028 atattgaaatgtctgagttcaagattttgtttggttagacaggcttccagcggagttgcatatgg 46742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 463
Target Start/End: Original strand, 8274332 - 8274405
Alignment:
Q  390 ttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtctttt 463  Q
    |||| ||||||||||||||| |||||||||| ||||| |||| |||||| || || |||||   ||||||||||    
T  8274332 ttccgacggagttgcatatgaatttctttcgtgacaggattgacttgccgaactacagattcccgtagtctttt 8274405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 346 - 464
Target Start/End: Original strand, 2899718 - 2899836
Alignment:
Q  346 atattggaatgtctgagttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattat 445  Q
    |||||| |||||||||||||||  || |||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  2899718 atattgaaatgtctgagttcaaaattttgtttggttagacaggcttccagcggagttgcatattgatttctttcgagacataattggcttgcccaattat 2899817  T
Q  446 agattttagtagtcttttt 464  Q
    |||||||||||||| ||||    
T  2899818 agattttagtagtcgtttt 2899836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 451
Target Start/End: Complemental strand, 26421327 - 26421242
Alignment:
Q  366 aaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattt 451  Q
    |||||| | |||||||||||| | ||| | | |||||||||||||||||||||||||| ||||||||  | |||||||||||||||    
T  26421327 aaggttttatttggttagacacgcttcaagctgagttgcatatggatttctttcgagatagaattggtctacccaattatagattt 26421242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 462
Target Start/End: Complemental strand, 4861348 - 4861249
Alignment:
Q  363 ttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttt 462  Q
    |||| |||| |||||||||||||| | |||   | ||||||||| | || |||| | |||||||||||||||  ||||||||||||||| ||||| ||||    
T  4861348 ttcagggttctgtttggttagacacgcttcgtgcagagttgcatttcgacttctatagagacagaattggctcacccaattatagatttcagtaggcttt 4861249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 462
Target Start/End: Complemental strand, 4881355 - 4881256
Alignment:
Q  363 ttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttt 462  Q
    |||| |||| |||||||||||||| | |||   | ||||||||| | || |||| | |||||||||||||||  ||||||||||||||| ||||| ||||    
T  4881355 ttcagggttctgtttggttagacacgcttcgtgcagagttgcatttcgacttctatagagacagaattggctcacccaattatagatttcagtaggcttt 4881256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 450
Target Start/End: Complemental strand, 11416012 - 11415971
Alignment:
Q  409 ggatttctttcgagacagaattggcttgcccaattatagatt 450  Q
    |||||||||| |||||||| |||||||||| |||||||||||    
T  11416012 ggatttctttagagacagatttggcttgcctaattatagatt 11415971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 363 - 464
Target Start/End: Original strand, 13327272 - 13327373
Alignment:
Q  363 ttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttt 462  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13327272 ttcaaggtaatgtttggttagacaggcttccagcggagttgcatctggatttctttcgagacagaattggcttgcccaattatagattttcgtagtcttt 13327371  T
Q  463 tt 464  Q
    ||    
T  13327372 tt 13327373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 364 - 464
Target Start/End: Complemental strand, 44453351 - 44453252
Alignment:
Q  364 tcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtctttt 463  Q
    |||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  44453351 tcaaggtt-tgtttggttagacaggcttccagcggagttgcatatggatttctttcgagacagaattggctttcccaattatagattttagtagtcgttt 44453253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 8656349 - 8656258
Alignment:
Q  373 tgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttttt 464  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||    
T  8656349 tgtttggttagacaggcttccaacggagttacatatggatttctttcaagacagaattggcttgcccaattgtagattttagtagtcgtttt 8656258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 463
Target Start/End: Original strand, 41068671 - 41068736
Alignment:
Q  398 gagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtctttt 463  Q
    |||||||||||||||||||||||||| ||||||||  | ||| ||||||||||||  |||||||||    
T  41068671 gagttgcatatggatttctttcgagatagaattggtctacccgattatagattttcttagtctttt 41068736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 462
Target Start/End: Complemental strand, 22391834 - 22391745
Alignment:
Q  373 tgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttt 462  Q
    |||||||||||||| | ||||  |  |||||||| | || ||||  ||||||||||||||||  |||||||||||||||| |||| ||||    
T  22391834 tgtttggttagacacgcttcctgctaagttgcatttcgacttctaccgagacagaattggctcacccaattatagatttttgtaggcttt 22391745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 17065520 - 17065428
Alignment:
Q  373 tgtttggttagacaggtttccaacggagttgcatatggatttcttt-cgagacagaattggcttgcccaattatagattttagtagtcttttt 464  Q
    |||||||||||||||| ||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||    
T  17065520 tgtttggttagacaggcttccagcggagttacatatggatttcttttcaagacagaattggcttgcccaattatagattttagtagtcgtttt 17065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 396 - 467
Target Start/End: Complemental strand, 38302715 - 38302644
Alignment:
Q  396 cggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtctttttatt 467  Q
    ||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||| |||||| |||||||    
T  38302715 cggagttgcatatggatttctatcgagatagaattggcttactcaattatagattttcgtagtcgttttatt 38302644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 25247898 - 25247838
Alignment:
Q  362 gttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgag 422  Q
    |||||||||| | |||||||||||| | ||| | | ||||||||||||||||||| |||||    
T  25247898 gttcaaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgag 25247838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 422
Target Start/End: Complemental strand, 25311682 - 25311622
Alignment:
Q  362 gttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgag 422  Q
    |||||||||| | |||||||||||| | ||| | | ||||||||||||||||||| |||||    
T  25311682 gttcaaggttctatttggttagacacgcttctagctgagttgcatatggatttctatcgag 25311622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 379 - 464
Target Start/End: Original strand, 30418801 - 30418886
Alignment:
Q  379 gttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttttt 464  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  30418801 gttagacaggcttccaacggagttacatatggatttctttcgaggcagaattggcttgctcaattataaattttagtagtcatttt 30418886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 28948661 - 28948774
Alignment:
Q  346 atattggaatgtctgagttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattat 445  Q
    ||||||||||||||||||||| |||| ||||||||| || | | |||||  ||||||||||| |||||||  |||||||||||||  ||||| ||| |||    
T  28948661 atattggaatgtctgagttcagggttttgtttggttggagatgcttccagtggagttgcatacggatttccatcgagacagaattcacttgctcaactat 28948760  T
Q  446 agattttagtagtc 459  Q
    ||||||| ||||||    
T  28948761 agattttcgtagtc 28948774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 373 - 464
Target Start/End: Complemental strand, 32234686 - 32234595
Alignment:
Q  373 tgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattttagtagtcttttt 464  Q
    ||||||||||||||||  |||| ||||||| |||||||||||||||| ||||| ||||||  ||||||||| ||||||||| ||||| ||||    
T  32234686 tgtttggttagacaggcctccagcggagttacatatggatttctttcaagacaaaattggtctgcccaattgtagattttattagtcgtttt 32234595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 363 - 432
Target Start/End: Complemental strand, 24361070 - 24361001
Alignment:
Q  363 ttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattgg 432  Q
    ||||||||||| |||||||||||| | ||| | | ||||| |||||||||||||||||||||||||||||    
T  24361070 ttcaaggttatatttggttagacacgcttctagctgagttacatatggatttctttcgagacagaattgg 24361001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 24440213 - 24440159
Alignment:
Q  397 ggagttgcatatggatttctttcgagacagaattggcttgcccaattatagattt 451  Q
    |||||||||||  ||||||| ||||||||||||||||||| | || |||||||||    
T  24440213 ggagttgcatacagatttctatcgagacagaattggcttgtcaaactatagattt 24440159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 432
Target Start/End: Original strand, 13521 - 13590
Alignment:
Q  363 ttcaaggttatgtttggttagacaggtttccaacggagttgcatatggatttctttcgagacagaattgg 432  Q
    ||||||||| | |||||||||| | | ||||||| ||| ||||| ||||||||| ||| |||||||||||    
T  13521 ttcaaggttctatttggttagaaacgcttccaactgagctgcatttggatttctatcgcgacagaattgg 13590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University