View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9960_1D_low_9 (Length: 466)
Name: NF9960_1D_low_9
Description: NF9960_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9960_1D_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 22 - 466
Target Start/End: Original strand, 45483442 - 45483886
Alignment:
| Q |
22 |
gttttaacaacataacagataaatagaacttttctgaaccaacatggcatacgaataagtaccttgattaggaaaagttttcacaactttttcaacttca |
121 |
Q |
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| T |
45483442 |
gttttaacaacataacagataaatagaacttttctgaaccaacatggcatacgaataagtaccttgattaggaaaagttttcacaactttttcaacttca |
45483541 |
T |
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| Q |
122 |
tccctggatatgccatctttctcatacattctttgaacaatattcagtatatcttcctggttaggctgcctgtgtcacatttacaacaacattttaggga |
221 |
Q |
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| T |
45483542 |
tccctggatatgccatctttctcatacattctttgaacaatattcagtatatcttcctggttaggctgcctgtgtcacatttacaacaacatttcaggga |
45483641 |
T |
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| Q |
222 |
agagtgacatagcttacttagtttcatttcatgaaatcagatacttcagagtcattgcattagcaatgtgatagatgaggtaatcatgctaaacatagct |
321 |
Q |
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| T |
45483642 |
agaatgacatagcttacctagtttcatttcatgaaatcagatacttcagagtcattgcattagcaatgtgatagatgaggtaatcatgctaaacatagct |
45483741 |
T |
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| Q |
322 |
ttatcaatcacatcgatcatgaaatttcattccacagtactaagcaaaaattcaactaaaacatttaaaccagcaatgcacctggcaaaaactaccataa |
421 |
Q |
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| T |
45483742 |
ttatcaatcacatcgatcatgaaatttcattccacagtactaagcaaaaattcaaccaaaacatttaaaccagcaatgcacctggcaaaaactaccataa |
45483841 |
T |
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| Q |
422 |
ttaaaatacatgaatggcaagcaataatcctagaataagagaaat |
466 |
Q |
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| T |
45483842 |
ttaaaatacatgaatggcaagcaataatcctagaataagagaaat |
45483886 |
T |
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