View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9960_2D_high_4 (Length: 896)

Name: NF9960_2D_high_4
Description: NF9960_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9960_2D_high_4
NF9960_2D_high_4
[»] chr8 (1 HSPs)
chr8 (17-875)||(41728837-41729695)


Alignment Details
Target: chr8 (Bit Score: 847; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 17 - 875
Target Start/End: Complemental strand, 41729695 - 41728837
Alignment:
Q  17 acatcaaaaaaccaaatgctacaagcccaagtaaactgccaacaatactaattcccagcagtgctgtttcacttagcctcccacgtttctcagacctcga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729695 acatcaaaaaaccaaatgctacaagcccaagtaaactgccaacaatactaattcccagcagtgctgtttcacttagcctcccacgtttctcagacctcga 41729596  T
Q  117 agaaggctcataaaccggcgaaagcacaggcgaaacggcagtaaaatttctgagagtaatgttattcccaacaaacgctgaatcaggaaacctttgtaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729595 agaaggctcataaaccggcgaaagcacaggcgaaacggcagtaaaatttctgagagtaatgttattcccaacaaacgctgaatcaggaaacctttgtaaa 41729496  T
Q  217 gatttaggcacagtaccatgtaaatcattgttagacaaattcagcacctgtaaccttgagaaatgaatatcaggaatttcaccagaaagggaattatttg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729495 gatttaggcacagtaccatgtaaatcattgttagacaaattcagcacctgtaaccttgagaaatgaatatcaggaatttcaccagaaagggaattatttg 41729396  T
Q  317 caagattcaaaccagcaagctgagtcaaattagaaagggaaagcggaatagtaccgttgaatttgttattagacaaattaacaacagtaagattcttcca 416  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729395 caaggttcaaaccagcaagctgagtcaaattagaaagcgaaagcggaatagtaccgttgaatttgttattagacaaattaacaacagtaagattcttcca 41729296  T
Q  417 aactgagaaatcaggcaaaggcccagataaattattggactgaagataaagaaaagacaagttttttagattggaaaaatcacttggaaaaaacccagat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729295 aactgagaaatcaggcaaaggcccagataaattattggactgaagataaagaaaagacaagttttttagattggaaaaatcacttggaaaaaacccagat 41729196  T
Q  517 attaaattggatctaagactaagaatttcaagagctgaaaggttactgatagtatttggtggaatattgccatgaaatccgacaccaggtaaacggatag 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41729195 attaaattggatctaagactaagaatttcaagagctgaaaggttactgatagtatttggtggaatattgccatgaaatccgacaccaggtaaacggatag 41729096  T
Q  617 ctataactctagacctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaaatttgattccaattcaaagtccttgaagggggaaactt 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41729095 ctataactctagacctatcttcattgcaagtaacaccagtccaattatcacaaacagaagaactttgattccaattcaaagtccttgaagggggaaactt 41728996  T
Q  717 gttcacaaaatcaagcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaacaatatgcataaaatgtaaagaaatttcatgttt 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41728995 gttcacaaaatcaagcaaaacctctttatcttcaacagggtcacaatttccttgccatatacacaacaatatgcataaaatgtaaagaaatttcatgttt 41728896  T
Q  817 ttccacttcaagtagtttctgcaataagcttaatgctgcatagattcaaatgaaagtac 875  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41728895 ttccacttcaagtagtttctgcaataagcttaatgctgcatagattcaaatgaaagtac 41728837  T

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